Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3683

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3682 and Shewana3_3683 are separated by 429 nucleotidesShewana3_3683 and Shewana3_3684 are separated by 168 nucleotides Shewana3_3682: Shewana3_3682 - ornithine decarboxylase (RefSeq), at 4,420,664 to 4,421,839 _3682 Shewana3_3683: Shewana3_3683 - hypothetical protein (RefSeq), at 4,422,269 to 4,422,748 _3683 Shewana3_3684: Shewana3_3684 - MscS mechanosensitive ion channel (RefSeq), at 4,422,917 to 4,423,753 _3684 Position (kb) 4422 4423Strain fitness (log2 ratio) -1 0 1 2at 4421.297 kb on + strand, within Shewana3_3682at 4421.331 kb on - strand, within Shewana3_3682at 4421.388 kb on - strand, within Shewana3_3682at 4421.423 kb on - strand, within Shewana3_3682at 4421.880 kb on - strandat 4421.983 kb on + strandat 4422.027 kb on + strandat 4422.118 kb on - strandat 4422.132 kb on + strandat 4422.140 kb on - strandat 4422.169 kb on + strandat 4422.169 kb on + strandat 4422.169 kb on + strandat 4422.202 kb on + strandat 4422.213 kb on + strandat 4422.219 kb on - strandat 4422.296 kb on + strandat 4422.302 kb on + strandat 4422.310 kb on - strandat 4422.310 kb on - strandat 4422.419 kb on + strand, within Shewana3_3683at 4422.427 kb on - strand, within Shewana3_3683at 4422.622 kb on - strand, within Shewana3_3683at 4422.850 kb on + strandat 4423.455 kb on + strand, within Shewana3_3684at 4423.524 kb on + strand, within Shewana3_3684at 4423.689 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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4,421,297 + Shewana3_3682 0.54 -0.6
4,421,331 - Shewana3_3682 0.57 +0.2
4,421,388 - Shewana3_3682 0.62 +0.6
4,421,423 - Shewana3_3682 0.65 +0.1
4,421,880 - -0.4
4,421,983 + -0.7
4,422,027 + -0.4
4,422,118 - +0.7
4,422,132 + -0.6
4,422,140 - +0.1
4,422,169 + -0.4
4,422,169 + -0.6
4,422,169 + -0.2
4,422,202 + +0.8
4,422,213 + +0.4
4,422,219 - +0.3
4,422,296 + -0.3
4,422,302 + +0.4
4,422,310 - +0.3
4,422,310 - -0.1
4,422,419 + Shewana3_3683 0.31 +0.1
4,422,427 - Shewana3_3683 0.33 -0.8
4,422,622 - Shewana3_3683 0.74 -0.2
4,422,850 + -1.1
4,423,455 + Shewana3_3684 0.64 -0.2
4,423,524 + Shewana3_3684 0.73 +0.5
4,423,689 + +2.6

Or see this region's nucleotide sequence