Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3588

Experiment: L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lactate (C)
4,305,667	+		Shewana3_3587	0.36	+0.4
4,305,718	+		Shewana3_3587	0.41	+1.1
4,305,718	+		Shewana3_3587	0.41	+0.3
4,305,726	-		Shewana3_3587	0.41	-0.7
4,305,726	-		Shewana3_3587	0.41	+0.5
4,305,760	-		Shewana3_3587	0.44	+0.2
4,305,760	-		Shewana3_3587	0.44	+0.0
4,305,760	-		Shewana3_3587	0.44	-1.0
4,305,762	+		Shewana3_3587	0.44	-0.1
4,305,787	-		Shewana3_3587	0.46	+0.3
4,305,891	-		Shewana3_3587	0.55	+0.8
4,306,015	-		Shewana3_3587	0.66	-0.0
4,306,024	+		Shewana3_3587	0.66	+0.3
4,306,051	-		Shewana3_3587	0.69	+0.4
4,306,202	-		Shewana3_3587	0.81	-0.6
4,306,202	-		Shewana3_3587	0.81	-0.9
4,306,209	-		Shewana3_3587	0.82	-0.7
4,306,310	-				+0.3
4,306,359	+				-0.8
4,306,367	-				-0.5
4,306,391	-				-0.7
4,306,394	+				-0.2
4,306,427	+				-0.1
4,306,435	-				+0.2
4,306,472	+				+0.3
4,306,472	+				+0.3
4,306,472	+				+0.8
4,306,480	-				-0.6
4,306,480	-				-0.1
4,306,573	-				-0.6
4,306,689	+				-0.6
4,306,832	-				+0.3
4,306,869	+				+0.2
4,306,879	+				+0.3
4,306,887	-				+0.7
4,306,887	-				+0.2
4,307,087	-		Shewana3_3588	0.17	-0.5
4,307,114	-		Shewana3_3588	0.18	-0.1
4,307,227	-		Shewana3_3588	0.22	+0.1
4,307,246	+		Shewana3_3588	0.22	+0.4
4,307,330	-		Shewana3_3588	0.25	+0.1
4,307,535	-		Shewana3_3588	0.33	+0.3
4,307,567	-		Shewana3_3588	0.34	+0.3
4,307,593	-		Shewana3_3588	0.35	+0.3
4,307,695	-		Shewana3_3588	0.38	-0.1
4,307,695	-		Shewana3_3588	0.38	+1.2
4,307,798	+		Shewana3_3588	0.42	+0.4
4,307,821	-		Shewana3_3588	0.43	-0.5
4,307,825	+		Shewana3_3588	0.43	+0.1
4,307,903	+		Shewana3_3588	0.46	+1.0
4,308,052	+		Shewana3_3588	0.51	-0.9
4,308,060	-		Shewana3_3588	0.51	+0.3
4,308,148	-		Shewana3_3588	0.54	-0.0
4,308,243	-		Shewana3_3588	0.58	-1.1
4,308,417	+		Shewana3_3588	0.64	-0.2
4,308,417	+		Shewana3_3588	0.64	+0.2
4,308,417	+		Shewana3_3588	0.64	+0.3
4,308,430	-		Shewana3_3588	0.64	-0.1
4,308,529	-		Shewana3_3588	0.68	+0.4
4,308,604	+		Shewana3_3588	0.70	+0.9
4,308,604	+		Shewana3_3588	0.70	+0.3
4,308,691	-		Shewana3_3588	0.73	+0.3
4,308,736	-		Shewana3_3588	0.75	+0.1
4,308,796	+		Shewana3_3588	0.77	+0.9
4,308,911	+		Shewana3_3588	0.81	+0.1
4,308,911	+		Shewana3_3588	0.81	+0.2
4,309,163	-				+0.0
4,309,183	-				+0.3
4,309,286	-				+0.6
4,309,295	+				-0.2
4,309,297	+				-0.3
4,309,318	+				+0.4
4,309,350	-				-0.1
4,309,350	-				-1.1
4,309,350	-				+0.9
4,309,374	-				+0.5
4,309,419	-				-0.4
4,309,503	-				-0.6
4,309,503	-				+0.2
4,309,678	+				-0.6
4,309,678	-				-0.0
4,309,680	+				-0.5
4,309,694	+				-0.7
4,309,694	+				-0.6
4,309,694	+				-1.0
4,309,694	+				+0.3
4,309,694	+				-0.6
4,309,702	-				-0.5
4,309,702	-				-0.6
4,309,704	+				+0.2
4,309,704	+				-2.5
4,309,704	+				+0.3
4,309,712	-				-0.6
4,309,718	-				-0.2
4,309,728	-				+0.2
4,309,735	+				-0.7
4,309,738	-				-0.1
4,309,740	+				+0.0
4,309,740	+				-0.8
4,309,740	+				+0.2
4,309,740	+				+0.2
4,309,740	+				+0.1
4,309,745	+				-1.0
4,309,745	+				-0.9
4,309,745	+				-0.7
4,309,745	+				-0.9
4,309,745	+				+0.7
4,309,748	-				+0.2
4,309,748	-				-0.6
4,309,753	-				+0.1
4,309,753	-				+0.1
4,309,753	-				+0.4
4,309,753	-				+0.2
4,309,753	-				-0.3
4,309,753	-				+0.6
4,309,753	-				-0.9
4,309,753	-				-0.8
4,309,753	-				-0.8
4,309,753	-				-0.2
4,309,761	-				+0.0
4,309,766	+				-0.7
4,309,779	-				-1.4
4,309,784	-				-0.6
4,309,784	-				-0.3
4,309,806	+		Shewana3_3589	0.12	-1.0
4,309,808	-		Shewana3_3589	0.13	-0.0
4,309,844	+		Shewana3_3589	0.19	-0.5
4,309,844	+		Shewana3_3589	0.19	+0.5
4,309,844	+		Shewana3_3589	0.19	-0.8
4,309,844	+		Shewana3_3589	0.19	-0.7
4,309,865	+		Shewana3_3589	0.22	-0.5
4,309,895	+		Shewana3_3589	0.27	+0.6
4,309,966	+		Shewana3_3589	0.39	+0.3
4,309,968	+		Shewana3_3589	0.40	-0.1
4,309,977	-		Shewana3_3589	0.41	-0.4
4,309,991	+		Shewana3_3589	0.43	+0.4
4,309,991	+		Shewana3_3589	0.43	+0.7
4,309,991	+		Shewana3_3589	0.43	+0.3
4,309,999	-		Shewana3_3589	0.45	+0.1
4,310,003	+		Shewana3_3589	0.45	-0.5
4,310,003	+		Shewana3_3589	0.45	-0.6
4,310,011	-		Shewana3_3589	0.47	+0.4
4,310,011	-		Shewana3_3589	0.47	-0.1
4,310,017	-		Shewana3_3589	0.48	-0.5
4,310,032	-		Shewana3_3589	0.50	-0.3
4,310,070	+		Shewana3_3589	0.57	+0.1
4,310,070	+		Shewana3_3589	0.57	-1.4
4,310,131	-		Shewana3_3589	0.67	+0.8
4,310,138	-		Shewana3_3589	0.68	+0.8
4,310,140	+		Shewana3_3589	0.69	+1.0
4,310,140	+		Shewana3_3589	0.69	-0.1
4,310,140	+		Shewana3_3589	0.69	+0.7
4,310,140	+		Shewana3_3589	0.69	-3.4
4,310,185	+		Shewana3_3589	0.76	+0.3
4,310,185	+		Shewana3_3589	0.76	+0.3
4,310,185	+		Shewana3_3589	0.76	-1.2
4,310,186	+		Shewana3_3589	0.76	+0.4
4,310,193	-		Shewana3_3589	0.77	+0.0
4,310,193	-		Shewana3_3589	0.77	+0.3
4,310,249	-		Shewana3_3589	0.87	+0.0
4,310,251	+		Shewana3_3589	0.87	+0.3
4,310,320	-				-0.1
4,310,333	+				-0.1
4,310,390	+				-0.3
4,310,414	+				+0.5
4,310,440	-				+0.1