Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0669 and Shewana3_0670 overlap by 4 nucleotides Shewana3_0670 and Shewana3_0671 are separated by 2 nucleotides Shewana3_0671 and Shewana3_0672 are separated by 28 nucleotides Shewana3_0672 and Shewana3_0673 are separated by 105 nucleotides Shewana3_0673 and Shewana3_0674 overlap by 4 nucleotides
Shewana3_0669: Shewana3_0669 - hypothetical protein (RefSeq), at 790,351 to 791,205
_0669
Shewana3_0670: Shewana3_0670 - PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq), at 791,202 to 791,645
_0670
Shewana3_0671: Shewana3_0671 - sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq), at 791,648 to 791,935
_0671
Shewana3_0672: Shewana3_0672 - RNA polymerase factor sigma-54 (RefSeq), at 791,964 to 793,439
_0672
Shewana3_0673: Shewana3_0673 - ABC transporter related (RefSeq), at 793,545 to 794,276
_0673
Shewana3_0674: Shewana3_0674 - OstA family protein (RefSeq), at 794,273 to 794,824
_0674
Position (kb) 791
792
793
794 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 790.968 kb on + strand, within Shewana3_0669 at 791.077 kb on - strand, within Shewana3_0669 at 791.128 kb on - strand at 791.131 kb on + strand at 791.509 kb on - strand, within Shewana3_0670 at 791.541 kb on + strand, within Shewana3_0670 at 791.541 kb on + strand, within Shewana3_0670 at 791.680 kb on - strand, within Shewana3_0671 at 791.719 kb on - strand, within Shewana3_0671 at 791.761 kb on - strand, within Shewana3_0671 at 791.818 kb on - strand, within Shewana3_0671 at 791.837 kb on - strand, within Shewana3_0671 at 791.837 kb on - strand, within Shewana3_0671 at 791.877 kb on + strand, within Shewana3_0671 at 791.877 kb on + strand, within Shewana3_0671 at 791.885 kb on - strand, within Shewana3_0671 at 791.885 kb on - strand, within Shewana3_0671 at 791.885 kb on - strand, within Shewana3_0671 at 791.923 kb on + strand at 791.981 kb on + strand at 792.007 kb on + strand at 792.145 kb on + strand, within Shewana3_0672 at 792.167 kb on - strand, within Shewana3_0672 at 792.169 kb on + strand, within Shewana3_0672 at 792.492 kb on - strand, within Shewana3_0672 at 792.543 kb on - strand, within Shewana3_0672 at 792.649 kb on - strand, within Shewana3_0672 at 792.714 kb on + strand, within Shewana3_0672 at 792.759 kb on - strand, within Shewana3_0672 at 792.771 kb on - strand, within Shewana3_0672 at 792.865 kb on + strand, within Shewana3_0672 at 792.892 kb on + strand, within Shewana3_0672 at 792.906 kb on - strand, within Shewana3_0672 at 793.322 kb on - strand at 793.415 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 790,968 + Shewana3_0669 0.72 -0.4 791,077 - Shewana3_0669 0.85 -0.0 791,128 - -1.0 791,131 + +1.0 791,509 - Shewana3_0670 0.69 -3.1 791,541 + Shewana3_0670 0.76 -2.3 791,541 + Shewana3_0670 0.76 -3.3 791,680 - Shewana3_0671 0.11 -1.5 791,719 - Shewana3_0671 0.25 -0.0 791,761 - Shewana3_0671 0.39 +0.3 791,818 - Shewana3_0671 0.59 +0.6 791,837 - Shewana3_0671 0.66 +0.4 791,837 - Shewana3_0671 0.66 -0.4 791,877 + Shewana3_0671 0.80 -0.8 791,877 + Shewana3_0671 0.80 +0.1 791,885 - Shewana3_0671 0.82 -0.7 791,885 - Shewana3_0671 0.82 +0.3 791,885 - Shewana3_0671 0.82 -3.0 791,923 + -0.3 791,981 + -6.8 792,007 + -4.6 792,145 + Shewana3_0672 0.12 -0.0 792,167 - Shewana3_0672 0.14 -6.8 792,169 + Shewana3_0672 0.14 -4.5 792,492 - Shewana3_0672 0.36 -6.7 792,543 - Shewana3_0672 0.39 -5.2 792,649 - Shewana3_0672 0.46 -3.7 792,714 + Shewana3_0672 0.51 -5.4 792,759 - Shewana3_0672 0.54 -4.8 792,771 - Shewana3_0672 0.55 -4.2 792,865 + Shewana3_0672 0.61 -5.9 792,892 + Shewana3_0672 0.63 -5.9 792,906 - Shewana3_0672 0.64 -4.0 793,322 - -4.6 793,415 + -2.7
Or see this region's nucleotide sequence