Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0038 and Shewana3_0039 are separated by 122 nucleotides Shewana3_0039 and Shewana3_0040 are separated by 129 nucleotides Shewana3_0040 and Shewana3_0041 are separated by 29 nucleotides Shewana3_0041 and Shewana3_0042 are separated by 30 nucleotides
Shewana3_0038: Shewana3_0038 - hypothetical protein (RefSeq), at 45,203 to 45,679
_0038
Shewana3_0039: Shewana3_0039 - DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq), at 45,802 to 46,365
_0039
Shewana3_0040: Shewana3_0040 - translation factor SUA5 (RefSeq), at 46,495 to 47,061
_0040
Shewana3_0041: Shewana3_0041 - coproporphyrinogen III oxidase (RefSeq), at 47,091 to 47,999
_0041
Shewana3_0042: Shewana3_0042 - globin (RefSeq), at 48,030 to 48,467
_0042
Position (kb) 46
47
48 Strain fitness (log2 ratio) -1
0
1 at 45.527 kb on + strand, within Shewana3_0038 at 45.652 kb on + strand at 45.660 kb on - strand at 45.660 kb on - strand at 45.830 kb on - strand at 45.867 kb on + strand, within Shewana3_0039 at 45.874 kb on + strand, within Shewana3_0039 at 45.982 kb on + strand, within Shewana3_0039 at 46.005 kb on + strand, within Shewana3_0039 at 46.038 kb on + strand, within Shewana3_0039 at 46.106 kb on + strand, within Shewana3_0039 at 46.122 kb on + strand, within Shewana3_0039 at 46.128 kb on + strand, within Shewana3_0039 at 46.130 kb on - strand, within Shewana3_0039 at 46.137 kb on + strand, within Shewana3_0039 at 46.171 kb on - strand, within Shewana3_0039 at 46.368 kb on + strand at 46.409 kb on - strand at 47.079 kb on + strand at 47.166 kb on - strand at 47.241 kb on - strand, within Shewana3_0041 at 47.256 kb on + strand, within Shewana3_0041 at 47.300 kb on + strand, within Shewana3_0041
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 45,527 + Shewana3_0038 0.68 +0.1 45,652 + -0.3 45,660 - +0.2 45,660 - -1.2 45,830 - -0.8 45,867 + Shewana3_0039 0.12 +0.2 45,874 + Shewana3_0039 0.13 +0.5 45,982 + Shewana3_0039 0.32 +0.1 46,005 + Shewana3_0039 0.36 +0.0 46,038 + Shewana3_0039 0.42 -0.4 46,106 + Shewana3_0039 0.54 +0.3 46,122 + Shewana3_0039 0.57 +0.4 46,128 + Shewana3_0039 0.58 +0.2 46,130 - Shewana3_0039 0.58 -0.3 46,137 + Shewana3_0039 0.59 +0.1 46,171 - Shewana3_0039 0.65 -0.2 46,368 + +0.6 46,409 - -0.5 47,079 + -1.0 47,166 - -0.7 47,241 - Shewana3_0041 0.17 -1.6 47,256 + Shewana3_0041 0.18 +0.3 47,300 + Shewana3_0041 0.23 -1.7
Or see this region's nucleotide sequence