Strain Fitness in Shewanella amazonensis SB2B around Sama_2493

Experiment: LB rep1 t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB rep1 t2
2,993,639	+		Sama_2491	0.78	-1.0
2,993,639	+		Sama_2491	0.78	-1.5
2,993,639	+		Sama_2491	0.78	-2.9
2,993,639	+		Sama_2491	0.78	-0.5
2,993,639	+		Sama_2491	0.78	-1.3
2,993,639	+		Sama_2491	0.78	-2.1
2,993,640	-		Sama_2491	0.78	+1.0
2,993,677	+				+0.1
2,993,677	+				-1.1
2,993,678	-				-1.5
2,993,709	+				+0.6
2,993,710	-				-1.1
2,993,744	+				+0.0
2,993,760	+				+1.3
2,993,761	-				+0.0
2,993,781	+				+0.0
2,993,781	+				-0.3
2,993,781	+				+0.0
2,993,782	-				+1.5
2,993,782	-				+0.6
2,993,782	-				+2.3
2,993,782	-				-0.1
2,993,861	+				-2.5
2,993,861	+				+0.1
2,993,861	+				+1.2
2,993,861	+				-0.1
2,993,866	+				+0.3
2,993,866	+				+0.3
2,993,866	+				-0.9
2,993,866	+				-0.5
2,993,867	-				+0.5
2,993,880	+				+0.7
2,993,888	+				+1.0
2,993,888	+				-0.1
2,993,888	+				-1.0
2,993,888	+				+0.8
2,993,889	-				-1.5
2,993,889	-				-0.2
2,993,889	-				+1.3
2,993,889	-				-0.2
2,993,889	-				-0.9
2,993,891	+				+1.0
2,993,927	+				-1.3
2,993,965	+				-0.2
2,993,976	+				+0.5
2,993,976	+				-0.5
2,993,976	+				+0.0
2,994,011	-				+1.3
2,994,011	-				+1.0
2,994,012	+				+0.7
2,994,013	-				+1.0
2,994,020	-				-0.5
2,994,052	+		Sama_2492	0.13	+0.4
2,994,052	+		Sama_2492	0.13	+0.2
2,994,180	+		Sama_2492	0.47	+0.5
2,994,180	+		Sama_2492	0.47	-0.5
2,994,181	-		Sama_2492	0.48	+0.0
2,994,181	-		Sama_2492	0.48	+0.1
2,994,190	-		Sama_2492	0.50	-1.1
2,994,190	-		Sama_2492	0.50	-0.1
2,994,203	+		Sama_2492	0.54	+0.0
2,994,228	+		Sama_2492	0.60	-0.5
2,994,229	-		Sama_2492	0.61	-0.3
2,994,237	+		Sama_2492	0.63	-1.0
2,994,237	+		Sama_2492	0.63	+0.0
2,994,237	+		Sama_2492	0.63	+0.3
2,994,238	-		Sama_2492	0.63	-0.7
2,994,238	-		Sama_2492	0.63	-1.1
2,994,238	-		Sama_2492	0.63	-0.3
2,994,238	-		Sama_2492	0.63	-0.1
2,994,238	-		Sama_2492	0.63	-0.4
2,994,241	+		Sama_2492	0.64	-0.1
2,994,241	+		Sama_2492	0.64	+0.2
2,994,260	+		Sama_2492	0.69	-0.1
2,994,260	+		Sama_2492	0.69	-0.2
2,994,261	-		Sama_2492	0.69	+1.8
2,994,360	-				+0.2
2,994,390	+				+0.2
2,994,390	+				-0.5
2,994,390	+				+1.5
2,994,391	-				+0.6
2,994,391	-				-0.5
2,994,391	-				+1.0
2,994,391	-				+0.2
2,994,391	-				-1.1
2,994,391	-				-1.9
2,994,391	-				+0.2
2,994,392	+				-2.0
2,994,393	-				-1.0
2,994,393	-				-0.0
2,994,406	-				+0.2
2,994,406	-				-0.5
2,994,416	-				-0.1
2,994,421	+				-0.2
2,994,422	-				-1.5
2,994,435	+				+0.9
2,994,575	+				-0.1
2,994,576	-				-0.3
2,994,576	-				-0.1
2,994,577	+				+1.0
2,994,577	+				+0.2
2,994,578	-				+1.7
2,994,578	-				+1.3
2,994,578	-				-2.3
2,994,631	-				-0.5
2,994,643	+				+1.5
2,994,643	+				+0.0
2,994,725	+		Sama_2493	0.12	+0.6
2,994,725	+		Sama_2493	0.12	-0.8
2,994,725	+		Sama_2493	0.12	-0.5
2,994,792	-		Sama_2493	0.20	+0.3
2,994,817	-		Sama_2493	0.23	-0.5
2,994,859	+		Sama_2493	0.29	+0.0
2,994,900	+		Sama_2493	0.34	-0.5
2,994,900	+		Sama_2493	0.34	-0.3
2,994,900	+		Sama_2493	0.34	-1.1
2,994,936	+		Sama_2493	0.38	+0.7
2,994,936	+		Sama_2493	0.38	+0.2
2,994,937	-		Sama_2493	0.38	-0.1
2,994,937	-		Sama_2493	0.38	-0.4
2,994,937	-		Sama_2493	0.38	-0.2
2,994,942	-		Sama_2493	0.39	-1.5
2,994,983	-		Sama_2493	0.44	-0.2
2,995,014	-		Sama_2493	0.48	-0.3
2,995,033	-		Sama_2493	0.50	+1.0
2,995,033	-		Sama_2493	0.50	-1.1
2,995,074	-		Sama_2493	0.55	-1.1
2,995,098	+		Sama_2493	0.58	-0.0
2,995,153	-		Sama_2493	0.65	-1.1
2,995,153	-		Sama_2493	0.65	-0.5
2,995,258	+		Sama_2493	0.78	+0.5
2,995,259	-		Sama_2493	0.78	-0.1
2,995,285	+		Sama_2493	0.81	+0.8
2,995,285	+		Sama_2493	0.81	-1.2
2,995,286	-		Sama_2493	0.81	-0.1
2,995,286	-		Sama_2493	0.81	+0.2
2,995,391	+				+0.2
2,995,391	+				-0.3
2,995,392	-				+0.2
2,995,392	-				+0.5
2,995,452	+				+0.6
2,995,453	-				-3.1
2,995,455	+				-0.2
2,995,465	-				+0.4
2,995,465	-				+0.5
2,995,489	-				+0.3
2,995,489	-				-1.1
2,995,489	-				-1.9
2,995,495	+				-0.5
2,995,495	+				+0.7
2,995,496	-				+1.0
2,995,499	+				+0.1
2,995,499	+				-0.2
2,995,499	+				+0.5
2,995,500	-				+0.5
2,995,500	-				-0.9
2,995,501	+				+0.0
2,995,537	+				-1.0
2,995,537	+				+1.0
2,995,537	+				+0.5
2,995,537	+				+2.3
2,995,537	+				+0.7
2,995,537	+				-0.4
2,995,538	-				+1.0
2,995,538	-				+1.5
2,995,538	-				-0.5
2,995,538	-				+0.5
2,995,538	-				+0.7
2,995,575	-				+0.5
2,995,575	-				-0.1
2,995,587	-				+0.1
2,995,587	-				+0.8
2,995,587	-				+1.3
2,995,587	-				+1.3
2,995,636	+				-1.9
2,995,636	+				-0.5
2,995,637	-				+0.3
2,995,678	-		Sama_2494	0.16	+1.3
2,995,831	-		Sama_2494	0.40	+0.5
2,995,873	-		Sama_2494	0.47	+0.8
2,995,904	-		Sama_2494	0.51	+0.0
2,995,904	-		Sama_2494	0.51	+0.9
2,995,907	-		Sama_2494	0.52	+1.0
2,995,915	+		Sama_2494	0.53	-0.5
2,995,941	+		Sama_2494	0.57	+0.9
2,995,983	+		Sama_2494	0.64	+0.5
2,995,989	-		Sama_2494	0.64	+0.1
2,996,049	+		Sama_2494	0.74	-0.8
2,996,065	-		Sama_2494	0.76	+0.5
2,996,086	+		Sama_2494	0.80	+0.2
2,996,102	+		Sama_2494	0.82	+0.0
2,996,103	-		Sama_2494	0.82	+1.5
2,996,103	-		Sama_2494	0.82	-0.7
2,996,103	-		Sama_2494	0.82	-0.1
2,996,103	-		Sama_2494	0.82	+0.0
2,996,138	+		Sama_2494	0.88	-1.0
2,996,138	+		Sama_2494	0.88	+0.7
2,996,139	-		Sama_2494	0.88	+0.5
2,996,139	-		Sama_2494	0.88	+0.7
2,996,202	-				-0.1
2,996,202	-				+2.0
2,996,203	+				+0.8
2,996,203	+				-0.3
2,996,203	+				-1.1
2,996,203	+				+2.3
2,996,203	+				-0.5
2,996,204	-				+1.6
2,996,204	-				-0.8
2,996,204	-				-0.5
2,996,204	-				-0.5
2,996,204	-				+0.5
2,996,204	-				-0.2
2,996,204	-				-1.1
2,996,253	+				+0.9
2,996,259	+				-0.3
2,996,259	+				+0.5
2,996,259	+				-1.3
2,996,259	+				-0.3
2,996,259	+				-0.5
2,996,260	-				-1.0
2,996,260	-				-1.0
2,996,260	-				-0.5
2,996,262	+				-0.5
2,996,263	-				+0.2
2,996,316	+				+0.8
2,996,317	-				+1.4
2,996,317	-				+1.2
2,996,317	-				-1.4
2,996,317	-				+0.0
2,996,323	+				+1.8
2,996,323	+				-0.2
2,996,323	+				+1.6
2,996,323	+				-0.6
2,996,324	-				-0.5
2,996,324	-				-1.5
2,996,378	+				-0.1
2,996,378	+				+1.7
2,996,378	+				+0.0
2,996,379	-				-0.5
2,996,379	-				+0.2
2,996,379	-				-0.8
2,996,379	-				+0.7
2,996,381	+				-2.1
2,996,382	-				+1.3
2,996,382	-				+0.3
2,996,382	-				-0.4
2,996,387	-				-0.5
2,996,398	+				+1.8
2,996,399	-				+0.5
2,996,399	-				-0.9
2,996,409	-				+0.8
2,996,426	+		Sama_2495	0.13	-0.4
2,996,430	+		Sama_2495	0.13	+0.5
2,996,430	+		Sama_2495	0.13	+0.5
2,996,430	+		Sama_2495	0.13	-0.5
2,996,430	+		Sama_2495	0.13	-0.7
2,996,430	+		Sama_2495	0.13	+0.2
2,996,430	+		Sama_2495	0.13	-1.3
2,996,430	+		Sama_2495	0.13	-0.0
2,996,430	+		Sama_2495	0.13	-2.1
2,996,431	-		Sama_2495	0.14	-1.0
2,996,431	-		Sama_2495	0.14	+1.0
2,996,431	-		Sama_2495	0.14	-0.5
2,996,431	-		Sama_2495	0.14	-0.0
2,996,431	-		Sama_2495	0.14	-0.1
2,996,431	-		Sama_2495	0.14	+0.2
2,996,431	-		Sama_2495	0.14	+0.2
2,996,431	-		Sama_2495	0.14	+0.2
2,996,432	+		Sama_2495	0.14	-0.4