Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2776

Experiment: MoYLS4 with nitrate 50 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2775 and DvMF_2776 are separated by 58 nucleotidesDvMF_2776 and DvMF_2777 are separated by 7 nucleotidesDvMF_2777 and DvMF_2778 are separated by 3 nucleotides DvMF_2775: DvMF_2775 - major facilitator superfamily MFS_1 (RefSeq), at 3,510,180 to 3,511,346 _2775 DvMF_2776: DvMF_2776 - hypothetical protein (RefSeq), at 3,511,405 to 3,511,956 _2776 DvMF_2777: DvMF_2777 - hypothetical protein (RefSeq), at 3,511,964 to 3,512,887 _2777 DvMF_2778: DvMF_2778 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,512,891 to 3,515,362 _2778 Position (kb) 3511 3512Strain fitness (log2 ratio) -2 -1 0 1at 3510.576 kb on - strand, within DvMF_2775at 3510.923 kb on - strand, within DvMF_2775at 3510.937 kb on - strand, within DvMF_2775at 3511.040 kb on + strand, within DvMF_2775at 3511.048 kb on - strand, within DvMF_2775at 3511.050 kb on + strand, within DvMF_2775at 3511.737 kb on - strand, within DvMF_2776at 3511.796 kb on + strand, within DvMF_2776at 3511.804 kb on - strand, within DvMF_2776at 3512.071 kb on + strand, within DvMF_2777at 3512.090 kb on + strand, within DvMF_2777at 3512.166 kb on - strand, within DvMF_2777at 3512.281 kb on - strand, within DvMF_2777at 3512.326 kb on + strand, within DvMF_2777at 3512.326 kb on + strand, within DvMF_2777at 3512.524 kb on + strand, within DvMF_2777at 3512.711 kb on - strand, within DvMF_2777at 3512.782 kb on + strand, within DvMF_2777at 3512.924 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
remove
3,510,576 - DvMF_2775 0.34 -1.0
3,510,923 - DvMF_2775 0.64 -0.3
3,510,937 - DvMF_2775 0.65 -1.3
3,511,040 + DvMF_2775 0.74 -1.3
3,511,048 - DvMF_2775 0.74 +0.1
3,511,050 + DvMF_2775 0.75 -0.9
3,511,737 - DvMF_2776 0.60 -1.6
3,511,796 + DvMF_2776 0.71 -0.1
3,511,804 - DvMF_2776 0.72 -1.6
3,512,071 + DvMF_2777 0.12 -0.2
3,512,090 + DvMF_2777 0.14 -2.1
3,512,166 - DvMF_2777 0.22 -1.1
3,512,281 - DvMF_2777 0.34 -1.1
3,512,326 + DvMF_2777 0.39 -0.9
3,512,326 + DvMF_2777 0.39 -0.8
3,512,524 + DvMF_2777 0.61 -0.9
3,512,711 - DvMF_2777 0.81 -1.1
3,512,782 + DvMF_2777 0.89 -1.4
3,512,924 + -1.1

Or see this region's nucleotide sequence