Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2588

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2587 and DvMF_2588 are separated by 77 nucleotidesDvMF_2588 and DvMF_2589 are separated by 236 nucleotides DvMF_2587: DvMF_2587 - maf protein (RefSeq), at 3,272,312 to 3,272,962 _2587 DvMF_2588: DvMF_2588 - phosphatidylglycerophosphatase A (RefSeq), at 3,273,040 to 3,273,564 _2588 DvMF_2589: DvMF_2589 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 3,273,801 to 3,274,532 _2589 Position (kb) 3273 3274Strain fitness (log2 ratio) -3 -2 -1 0 1at 3272.162 kb on - strandat 3272.172 kb on - strandat 3272.206 kb on - strandat 3272.530 kb on + strand, within DvMF_2587at 3272.597 kb on + strand, within DvMF_2587at 3272.629 kb on + strand, within DvMF_2587at 3272.778 kb on + strand, within DvMF_2587at 3272.961 kb on + strandat 3272.961 kb on + strandat 3273.576 kb on - strandat 3273.610 kb on + strandat 3274.189 kb on - strand, within DvMF_2589at 3274.282 kb on + strand, within DvMF_2589at 3274.331 kb on + strand, within DvMF_2589at 3274.415 kb on + strand, within DvMF_2589at 3274.433 kb on + strand, within DvMF_2589at 3274.433 kb on + strand, within DvMF_2589at 3274.433 kb on + strand, within DvMF_2589at 3274.441 kb on - strand, within DvMF_2589at 3274.523 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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3,272,162 - -0.9
3,272,172 - -1.1
3,272,206 - -1.4
3,272,530 + DvMF_2587 0.33 -0.8
3,272,597 + DvMF_2587 0.44 -0.6
3,272,629 + DvMF_2587 0.49 -0.7
3,272,778 + DvMF_2587 0.72 -0.7
3,272,961 + -1.2
3,272,961 + -0.3
3,273,576 - -0.2
3,273,610 + -1.4
3,274,189 - DvMF_2589 0.53 -0.2
3,274,282 + DvMF_2589 0.66 +0.2
3,274,331 + DvMF_2589 0.72 -0.8
3,274,415 + DvMF_2589 0.84 -0.5
3,274,433 + DvMF_2589 0.86 -3.3
3,274,433 + DvMF_2589 0.86 -1.8
3,274,433 + DvMF_2589 0.86 +0.1
3,274,441 - DvMF_2589 0.87 -1.5
3,274,523 - -1.6

Or see this region's nucleotide sequence