Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2579

Experiment: MoYLS4 with nitrate 50 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2577 and DvMF_2578 are separated by 225 nucleotidesDvMF_2578 and DvMF_2579 are separated by 481 nucleotidesDvMF_2579 and DvMF_2580 are separated by 397 nucleotides DvMF_2577: DvMF_2577 - potassium-transporting ATPase subunit A (RefSeq), at 3,259,050 to 3,260,888 _2577 DvMF_2578: DvMF_2578 - K+-transporting ATPase, F subunit (RefSeq), at 3,261,114 to 3,261,203 _2578 DvMF_2579: DvMF_2579 - transcriptional regulator, ArsR family (RefSeq), at 3,261,685 to 3,262,623 _2579 DvMF_2580: DvMF_2580 - S-adenosyl-L-homocysteine hydrolase (RefSeq), at 3,263,021 to 3,264,460 _2580 Position (kb) 3261 3262 3263Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3261.070 kb on + strandat 3261.120 kb on - strandat 3261.120 kb on - strandat 3261.197 kb on + strandat 3261.205 kb on - strandat 3261.205 kb on - strandat 3261.279 kb on + strandat 3261.413 kb on - strandat 3261.556 kb on - strandat 3262.617 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
remove
3,261,070 + -1.2
3,261,120 - -2.0
3,261,120 - -1.9
3,261,197 + -0.3
3,261,205 - +3.2
3,261,205 - +0.6
3,261,279 + -1.5
3,261,413 - -0.6
3,261,556 - -1.0
3,262,617 - +0.3

Or see this region's nucleotide sequence