Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2578

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2577 and DvMF_2578 are separated by 225 nucleotidesDvMF_2578 and DvMF_2579 are separated by 481 nucleotides DvMF_2577: DvMF_2577 - potassium-transporting ATPase subunit A (RefSeq), at 3,259,050 to 3,260,888 _2577 DvMF_2578: DvMF_2578 - K+-transporting ATPase, F subunit (RefSeq), at 3,261,114 to 3,261,203 _2578 DvMF_2579: DvMF_2579 - transcriptional regulator, ArsR family (RefSeq), at 3,261,685 to 3,262,623 _2579 Position (kb) 3261 3262Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3260.246 kb on - strand, within DvMF_2577at 3260.246 kb on - strand, within DvMF_2577at 3260.294 kb on - strand, within DvMF_2577at 3260.354 kb on - strand, within DvMF_2577at 3260.362 kb on - strand, within DvMF_2577at 3260.362 kb on - strand, within DvMF_2577at 3260.382 kb on - strand, within DvMF_2577at 3260.615 kb on - strand, within DvMF_2577at 3260.675 kb on - strand, within DvMF_2577at 3261.070 kb on + strandat 3261.120 kb on - strandat 3261.120 kb on - strandat 3261.197 kb on + strandat 3261.205 kb on - strandat 3261.205 kb on - strandat 3261.279 kb on + strandat 3261.413 kb on - strandat 3261.556 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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3,260,246 - DvMF_2577 0.65 -0.6
3,260,246 - DvMF_2577 0.65 -0.2
3,260,294 - DvMF_2577 0.68 -0.7
3,260,354 - DvMF_2577 0.71 -0.4
3,260,362 - DvMF_2577 0.71 -0.4
3,260,362 - DvMF_2577 0.71 -1.7
3,260,382 - DvMF_2577 0.72 -0.9
3,260,615 - DvMF_2577 0.85 -0.5
3,260,675 - DvMF_2577 0.88 -1.3
3,261,070 + -1.2
3,261,120 - -2.0
3,261,120 - -1.9
3,261,197 + -0.3
3,261,205 - +3.2
3,261,205 - +0.6
3,261,279 + -1.5
3,261,413 - -0.6
3,261,556 - -1.0

Or see this region's nucleotide sequence