Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2472

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2471 and DvMF_2472 are separated by 282 nucleotidesDvMF_2472 and DvMF_2473 are separated by 54 nucleotides DvMF_2471: DvMF_2471 - cytoplasmic chaperone TorD family protein (RefSeq), at 3,116,322 to 3,117,053 _2471 DvMF_2472: DvMF_2472 - cytochrome d ubiquinol oxidase, subunit II (RefSeq), at 3,117,336 to 3,118,361 _2472 DvMF_2473: DvMF_2473 - cytochrome bd ubiquinol oxidase subunit I (RefSeq), at 3,118,416 to 3,119,717 _2473 Position (kb) 3117 3118 3119Strain fitness (log2 ratio) -2 -1 0 1at 3116.361 kb on + strandat 3116.405 kb on + strand, within DvMF_2471at 3116.649 kb on + strand, within DvMF_2471at 3116.662 kb on - strand, within DvMF_2471at 3116.714 kb on - strand, within DvMF_2471at 3116.967 kb on - strand, within DvMF_2471at 3117.084 kb on - strandat 3117.509 kb on + strand, within DvMF_2472at 3117.659 kb on + strand, within DvMF_2472at 3117.719 kb on - strand, within DvMF_2472at 3118.069 kb on - strand, within DvMF_2472at 3118.266 kb on + strandat 3118.409 kb on + strandat 3118.480 kb on + strandat 3118.637 kb on + strand, within DvMF_2473at 3118.642 kb on + strand, within DvMF_2473at 3118.935 kb on + strand, within DvMF_2473at 3119.004 kb on - strand, within DvMF_2473at 3119.047 kb on - strand, within DvMF_2473at 3119.262 kb on + strand, within DvMF_2473

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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3,116,361 + -0.7
3,116,405 + DvMF_2471 0.11 -0.8
3,116,649 + DvMF_2471 0.45 -1.0
3,116,662 - DvMF_2471 0.46 -0.9
3,116,714 - DvMF_2471 0.54 -0.0
3,116,967 - DvMF_2471 0.88 -1.3
3,117,084 - -0.6
3,117,509 + DvMF_2472 0.17 -1.0
3,117,659 + DvMF_2472 0.31 -1.2
3,117,719 - DvMF_2472 0.37 -0.4
3,118,069 - DvMF_2472 0.71 -0.1
3,118,266 + -0.8
3,118,409 + -0.1
3,118,480 + -2.5
3,118,637 + DvMF_2473 0.17 -1.0
3,118,642 + DvMF_2473 0.17 -0.6
3,118,935 + DvMF_2473 0.40 +0.3
3,119,004 - DvMF_2473 0.45 -1.0
3,119,047 - DvMF_2473 0.48 -0.4
3,119,262 + DvMF_2473 0.65 -0.5

Or see this region's nucleotide sequence