Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2457

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2456 and DvMF_2457 are separated by 233 nucleotidesDvMF_2457 and DvMF_2458 are separated by 749 nucleotides DvMF_2456: DvMF_2456 - exodeoxyribonuclease III (RefSeq), at 3,098,955 to 3,099,734 _2456 DvMF_2457: DvMF_2457 - hypothetical protein (RefSeq), at 3,099,968 to 3,100,159 _2457 DvMF_2458: DvMF_2458 - fumarate reductase respiratory complex transmembrane subunit (RefSeq), at 3,100,909 to 3,101,562 _2458 Position (kb) 3099 3100 3101Strain fitness (log2 ratio) -2 -1 0 1at 3099.121 kb on - strand, within DvMF_2456at 3099.219 kb on - strand, within DvMF_2456at 3099.404 kb on + strand, within DvMF_2456at 3099.412 kb on - strand, within DvMF_2456at 3099.493 kb on - strand, within DvMF_2456at 3099.530 kb on - strand, within DvMF_2456at 3099.537 kb on + strand, within DvMF_2456at 3099.545 kb on - strand, within DvMF_2456at 3099.560 kb on - strand, within DvMF_2456at 3100.027 kb on - strand, within DvMF_2457at 3100.027 kb on - strand, within DvMF_2457at 3100.067 kb on + strand, within DvMF_2457at 3100.439 kb on + strandat 3100.512 kb on - strandat 3100.839 kb on - strandat 3101.009 kb on + strand, within DvMF_2458

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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3,099,121 - DvMF_2456 0.21 -0.7
3,099,219 - DvMF_2456 0.34 +1.1
3,099,404 + DvMF_2456 0.58 -2.0
3,099,412 - DvMF_2456 0.59 -0.1
3,099,493 - DvMF_2456 0.69 -2.2
3,099,530 - DvMF_2456 0.74 -1.1
3,099,537 + DvMF_2456 0.75 -1.0
3,099,545 - DvMF_2456 0.76 -0.9
3,099,560 - DvMF_2456 0.78 -1.6
3,100,027 - DvMF_2457 0.31 +1.0
3,100,027 - DvMF_2457 0.31 -1.2
3,100,067 + DvMF_2457 0.52 -1.4
3,100,439 + -1.0
3,100,512 - -0.7
3,100,839 - -0.3
3,101,009 + DvMF_2458 0.15 +0.5

Or see this region's nucleotide sequence