Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2225

Experiment: MoYLS4 with nitrate 50 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2224 and DvMF_2225 are separated by 446 nucleotidesDvMF_2225 and DvMF_2226 are separated by 655 nucleotides DvMF_2224: DvMF_2224 - seryl-tRNA synthetase (RefSeq), at 2,785,206 to 2,786,483 _2224 DvMF_2225: DvMF_2225 - hypothetical protein (RefSeq), at 2,786,930 to 2,787,349 _2225 DvMF_2226: DvMF_2226 - type IV pilus assembly PilZ (RefSeq), at 2,788,005 to 2,788,403 _2226 Position (kb) 2786 2787 2788Strain fitness (log2 ratio) -2 -1 0 1at 2786.203 kb on + strand, within DvMF_2224at 2786.918 kb on + strandat 2786.968 kb on + strandat 2786.976 kb on - strand, within DvMF_2225at 2787.260 kb on - strand, within DvMF_2225at 2787.626 kb on - strandat 2787.930 kb on + strandat 2788.194 kb on - strand, within DvMF_2226at 2788.244 kb on + strand, within DvMF_2226

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
remove
2,786,203 + DvMF_2224 0.78 -2.2
2,786,918 + +0.5
2,786,968 + +0.2
2,786,976 - DvMF_2225 0.11 -0.2
2,787,260 - DvMF_2225 0.79 -0.5
2,787,626 - -0.4
2,787,930 + -0.8
2,788,194 - DvMF_2226 0.47 +0.3
2,788,244 + DvMF_2226 0.60 -0.9

Or see this region's nucleotide sequence