Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2199

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2198 and DvMF_2199 are separated by 283 nucleotidesDvMF_2199 and DvMF_2200 are separated by 288 nucleotides DvMF_2198: DvMF_2198 - DEAD/DEAH box helicase domain protein (RefSeq), at 2,747,636 to 2,751,232 _2198 DvMF_2199: DvMF_2199 - hypothetical protein (RefSeq), at 2,751,516 to 2,752,109 _2199 DvMF_2200: DvMF_2200 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,752,398 to 2,753,777 _2200 Position (kb) 2751 2752 2753Strain fitness (log2 ratio) -1 0 1at 2750.524 kb on - strand, within DvMF_2198at 2750.628 kb on + strand, within DvMF_2198at 2750.740 kb on + strand, within DvMF_2198at 2750.792 kb on + strand, within DvMF_2198at 2750.808 kb on - strand, within DvMF_2198at 2750.816 kb on + strand, within DvMF_2198at 2750.860 kb on + strand, within DvMF_2198at 2750.873 kb on + strandat 2750.881 kb on - strandat 2750.991 kb on + strandat 2751.048 kb on + strandat 2751.065 kb on + strandat 2751.185 kb on - strandat 2751.242 kb on - strandat 2751.322 kb on - strandat 2751.327 kb on - strandat 2751.573 kb on - strandat 2751.573 kb on - strandat 2751.739 kb on - strand, within DvMF_2199at 2751.784 kb on - strand, within DvMF_2199at 2751.971 kb on - strand, within DvMF_2199at 2752.022 kb on + strand, within DvMF_2199at 2752.066 kb on + strandat 2752.184 kb on + strandat 2752.221 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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2,750,524 - DvMF_2198 0.80 -1.1
2,750,628 + DvMF_2198 0.83 -1.1
2,750,740 + DvMF_2198 0.86 -1.5
2,750,792 + DvMF_2198 0.88 -1.7
2,750,808 - DvMF_2198 0.88 -0.9
2,750,816 + DvMF_2198 0.88 -0.6
2,750,860 + DvMF_2198 0.90 -0.8
2,750,873 + -0.6
2,750,881 - -0.8
2,750,991 + -1.5
2,751,048 + -1.5
2,751,065 + -0.6
2,751,185 - -0.8
2,751,242 - -0.5
2,751,322 - -0.4
2,751,327 - +0.8
2,751,573 - -0.5
2,751,573 - -0.6
2,751,739 - DvMF_2199 0.38 -0.1
2,751,784 - DvMF_2199 0.45 +0.3
2,751,971 - DvMF_2199 0.77 +0.5
2,752,022 + DvMF_2199 0.85 -1.0
2,752,066 + +0.9
2,752,184 + -0.9
2,752,221 - -0.4

Or see this region's nucleotide sequence