Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2177

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2175 and DvMF_2176 are separated by 107 nucleotidesDvMF_2176 and DvMF_2177 are separated by 372 nucleotidesDvMF_2177 and DvMF_2178 are separated by 242 nucleotidesDvMF_2178 and DvMF_2179 are separated by 184 nucleotides DvMF_2175: DvMF_2175 - transcriptional regulator, GntR family with aminotransferase domain (RefSeq), at 2,712,433 to 2,713,929 _2175 DvMF_2176: DvMF_2176 - hypothetical protein (RefSeq), at 2,714,037 to 2,714,462 _2176 DvMF_2177: DvMF_2177 - Hydantoinase/oxoprolinase (RefSeq), at 2,714,835 to 2,716,832 _2177 DvMF_2178: DvMF_2178 - export-related chaperone CsaA (RefSeq), at 2,717,075 to 2,717,440 _2178 DvMF_2179: DvMF_2179 - Methyltransferase type 11 (RefSeq), at 2,717,625 to 2,718,539 _2179 Position (kb) 2714 2715 2716 2717Strain fitness (log2 ratio) -2 -1 0 1at 2714.464 kb on + strandat 2714.464 kb on + strandat 2714.465 kb on - strandat 2714.734 kb on + strandat 2714.897 kb on + strandat 2715.113 kb on + strand, within DvMF_2177at 2715.510 kb on + strand, within DvMF_2177at 2715.510 kb on + strand, within DvMF_2177at 2715.510 kb on + strand, within DvMF_2177at 2715.510 kb on + strand, within DvMF_2177at 2715.518 kb on - strand, within DvMF_2177at 2715.594 kb on - strand, within DvMF_2177at 2715.716 kb on + strand, within DvMF_2177at 2715.759 kb on + strand, within DvMF_2177at 2715.773 kb on - strand, within DvMF_2177at 2716.089 kb on + strand, within DvMF_2177at 2716.132 kb on + strand, within DvMF_2177at 2716.203 kb on + strand, within DvMF_2177at 2716.437 kb on + strand, within DvMF_2177at 2716.641 kb on + strandat 2716.750 kb on + strandat 2716.759 kb on - strandat 2716.909 kb on - strandat 2717.091 kb on - strandat 2717.127 kb on + strand, within DvMF_2178at 2717.322 kb on + strand, within DvMF_2178at 2717.478 kb on + strandat 2717.756 kb on + strand, within DvMF_2179

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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2,714,464 + -1.1
2,714,464 + -0.9
2,714,465 - +0.1
2,714,734 + -1.3
2,714,897 + -1.1
2,715,113 + DvMF_2177 0.14 -1.1
2,715,510 + DvMF_2177 0.34 -0.1
2,715,510 + DvMF_2177 0.34 -1.7
2,715,510 + DvMF_2177 0.34 -1.5
2,715,510 + DvMF_2177 0.34 -2.0
2,715,518 - DvMF_2177 0.34 -0.3
2,715,594 - DvMF_2177 0.38 -1.4
2,715,716 + DvMF_2177 0.44 -1.3
2,715,759 + DvMF_2177 0.46 -1.3
2,715,773 - DvMF_2177 0.47 -0.2
2,716,089 + DvMF_2177 0.63 -1.8
2,716,132 + DvMF_2177 0.65 -1.1
2,716,203 + DvMF_2177 0.68 -0.3
2,716,437 + DvMF_2177 0.80 -2.3
2,716,641 + -2.0
2,716,750 + -0.5
2,716,759 - -2.1
2,716,909 - -0.7
2,717,091 - -0.3
2,717,127 + DvMF_2178 0.14 -0.9
2,717,322 + DvMF_2178 0.67 -0.9
2,717,478 + -1.6
2,717,756 + DvMF_2179 0.14 +0.6

Or see this region's nucleotide sequence