Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2175 and DvMF_2176 are separated by 107 nucleotides DvMF_2176 and DvMF_2177 are separated by 372 nucleotides DvMF_2177 and DvMF_2178 are separated by 242 nucleotides DvMF_2178 and DvMF_2179 are separated by 184 nucleotides
DvMF_2175: DvMF_2175 - transcriptional regulator, GntR family with aminotransferase domain (RefSeq), at 2,712,433 to 2,713,929
_2175
DvMF_2176: DvMF_2176 - hypothetical protein (RefSeq), at 2,714,037 to 2,714,462
_2176
DvMF_2177: DvMF_2177 - Hydantoinase/oxoprolinase (RefSeq), at 2,714,835 to 2,716,832
_2177
DvMF_2178: DvMF_2178 - export-related chaperone CsaA (RefSeq), at 2,717,075 to 2,717,440
_2178
DvMF_2179: DvMF_2179 - Methyltransferase type 11 (RefSeq), at 2,717,625 to 2,718,539
_2179
Position (kb)
2714
2715
2716
2717 Strain fitness (log2 ratio)
-2
-1
0
1 at 2714.464 kb on + strand at 2714.464 kb on + strand at 2714.465 kb on - strand at 2714.734 kb on + strand at 2714.897 kb on + strand at 2715.113 kb on + strand, within DvMF_2177 at 2715.510 kb on + strand, within DvMF_2177 at 2715.510 kb on + strand, within DvMF_2177 at 2715.510 kb on + strand, within DvMF_2177 at 2715.510 kb on + strand, within DvMF_2177 at 2715.518 kb on - strand, within DvMF_2177 at 2715.594 kb on - strand, within DvMF_2177 at 2715.716 kb on + strand, within DvMF_2177 at 2715.759 kb on + strand, within DvMF_2177 at 2715.773 kb on - strand, within DvMF_2177 at 2716.089 kb on + strand, within DvMF_2177 at 2716.132 kb on + strand, within DvMF_2177 at 2716.203 kb on + strand, within DvMF_2177 at 2716.437 kb on + strand, within DvMF_2177 at 2716.641 kb on + strand at 2716.750 kb on + strand at 2716.759 kb on - strand at 2716.909 kb on - strand at 2717.091 kb on - strand at 2717.127 kb on + strand, within DvMF_2178 at 2717.322 kb on + strand, within DvMF_2178 at 2717.478 kb on + strand at 2717.756 kb on + strand, within DvMF_2179
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 2,714,464 + -1.1 2,714,464 + -0.9 2,714,465 - +0.1 2,714,734 + -1.3 2,714,897 + -1.1 2,715,113 + DvMF_2177 0.14 -1.1 2,715,510 + DvMF_2177 0.34 -0.1 2,715,510 + DvMF_2177 0.34 -1.7 2,715,510 + DvMF_2177 0.34 -1.5 2,715,510 + DvMF_2177 0.34 -2.0 2,715,518 - DvMF_2177 0.34 -0.3 2,715,594 - DvMF_2177 0.38 -1.4 2,715,716 + DvMF_2177 0.44 -1.3 2,715,759 + DvMF_2177 0.46 -1.3 2,715,773 - DvMF_2177 0.47 -0.2 2,716,089 + DvMF_2177 0.63 -1.8 2,716,132 + DvMF_2177 0.65 -1.1 2,716,203 + DvMF_2177 0.68 -0.3 2,716,437 + DvMF_2177 0.80 -2.3 2,716,641 + -2.0 2,716,750 + -0.5 2,716,759 - -2.1 2,716,909 - -0.7 2,717,091 - -0.3 2,717,127 + DvMF_2178 0.14 -0.9 2,717,322 + DvMF_2178 0.67 -0.9 2,717,478 + -1.6 2,717,756 + DvMF_2179 0.14 +0.6
Or see this region's nucleotide sequence