Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2124

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2123 and DvMF_2124 are separated by 236 nucleotidesDvMF_2124 and DvMF_2125 are separated by 371 nucleotides DvMF_2123: DvMF_2123 - chromosome replication initiation inhibitor protein (RefSeq), at 2,642,183 to 2,643,145 _2123 DvMF_2124: DvMF_2124 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 2,643,382 to 2,644,011 _2124 DvMF_2125: DvMF_2125 - DEAD/DEAH box helicase domain protein (RefSeq), at 2,644,383 to 2,645,978 _2125 Position (kb) 2643 2644 2645Strain fitness (log2 ratio) -2 -1 0 1at 2642.454 kb on - strand, within DvMF_2123at 2642.455 kb on + strand, within DvMF_2123at 2642.542 kb on - strand, within DvMF_2123at 2642.542 kb on - strand, within DvMF_2123at 2642.981 kb on + strand, within DvMF_2123at 2643.209 kb on + strandat 2643.209 kb on + strandat 2643.217 kb on - strandat 2643.256 kb on + strandat 2643.292 kb on + strandat 2643.465 kb on + strand, within DvMF_2124at 2643.930 kb on - strand, within DvMF_2124at 2643.963 kb on + strandat 2644.055 kb on + strandat 2644.063 kb on - strandat 2644.354 kb on + strandat 2644.362 kb on - strandat 2644.593 kb on - strand, within DvMF_2125

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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2,642,454 - DvMF_2123 0.28 -0.3
2,642,455 + DvMF_2123 0.28 -0.1
2,642,542 - DvMF_2123 0.37 +0.1
2,642,542 - DvMF_2123 0.37 -0.8
2,642,981 + DvMF_2123 0.83 +0.3
2,643,209 + -1.0
2,643,209 + -0.4
2,643,217 - +0.4
2,643,256 + -0.2
2,643,292 + -1.1
2,643,465 + DvMF_2124 0.13 -1.3
2,643,930 - DvMF_2124 0.87 -0.1
2,643,963 + -0.4
2,644,055 + -0.9
2,644,063 - -0.9
2,644,354 + -1.1
2,644,362 - -2.3
2,644,593 - DvMF_2125 0.13 -0.1

Or see this region's nucleotide sequence