Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2085

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2084 and DvMF_2085 are separated by 188 nucleotidesDvMF_2085 and DvMF_2086 are separated by 244 nucleotidesDvMF_2086 and asnC are separated by 252 nucleotides DvMF_2084: DvMF_2084 - DNA gyrase, A subunit (RefSeq), at 2,593,967 to 2,596,405 _2084 DvMF_2085: DvMF_2085 - putative lipoprotein (RefSeq), at 2,596,594 to 2,597,433 _2085 DvMF_2086: DvMF_2086 - UspA domain protein (RefSeq), at 2,597,678 to 2,598,139 _2086 DvMF_2087: asnC - asparaginyl-tRNA synthetase (RefSeq), at 2,598,392 to 2,599,807 asnC Position (kb) 2596 2597 2598Strain fitness (log2 ratio) -2 -1 0 1at 2596.408 kb on - strandat 2596.819 kb on + strand, within DvMF_2085at 2596.891 kb on + strand, within DvMF_2085at 2597.050 kb on + strand, within DvMF_2085at 2597.138 kb on + strand, within DvMF_2085at 2597.143 kb on + strand, within DvMF_2085at 2597.832 kb on + strand, within DvMF_2086at 2597.854 kb on - strand, within DvMF_2086at 2597.903 kb on - strand, within DvMF_2086at 2598.018 kb on + strand, within DvMF_2086at 2598.092 kb on + strand, within DvMF_2086at 2598.197 kb on + strandat 2598.238 kb on - strandat 2598.250 kb on - strandat 2598.433 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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2,596,408 - -1.9
2,596,819 + DvMF_2085 0.27 +0.3
2,596,891 + DvMF_2085 0.35 +0.4
2,597,050 + DvMF_2085 0.54 -0.6
2,597,138 + DvMF_2085 0.65 -0.4
2,597,143 + DvMF_2085 0.65 -0.3
2,597,832 + DvMF_2086 0.33 -0.5
2,597,854 - DvMF_2086 0.38 -0.6
2,597,903 - DvMF_2086 0.49 -1.5
2,598,018 + DvMF_2086 0.74 -0.5
2,598,092 + DvMF_2086 0.90 -1.5
2,598,197 + -0.5
2,598,238 - -1.3
2,598,250 - -0.7
2,598,433 - -0.6

Or see this region's nucleotide sequence