Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1994

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1993 and DvMF_1994 are separated by 310 nucleotidesDvMF_1994 and DvMF_1995 are separated by 139 nucleotides DvMF_1993: DvMF_1993 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,469,673 to 2,471,133 _1993 DvMF_1994: DvMF_1994 - transcriptional regulator, GntR family (RefSeq), at 2,471,444 to 2,472,175 _1994 DvMF_1995: DvMF_1995 - Malate/L-lactate dehydrogenase (RefSeq), at 2,472,315 to 2,473,385 _1995 Position (kb) 2471 2472 2473Strain fitness (log2 ratio) -2 -1 0 1at 2470.494 kb on + strand, within DvMF_1993at 2471.192 kb on - strandat 2471.203 kb on + strandat 2471.351 kb on + strandat 2471.359 kb on - strandat 2472.295 kb on + strandat 2472.324 kb on + strandat 2472.448 kb on + strand, within DvMF_1995at 2472.448 kb on + strand, within DvMF_1995at 2472.448 kb on + strand, within DvMF_1995at 2472.675 kb on - strand, within DvMF_1995at 2472.799 kb on + strand, within DvMF_1995at 2472.822 kb on - strand, within DvMF_1995at 2473.094 kb on + strand, within DvMF_1995

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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2,470,494 + DvMF_1993 0.56 -1.0
2,471,192 - -0.4
2,471,203 + -0.6
2,471,351 + +0.3
2,471,359 - -0.8
2,472,295 + -1.3
2,472,324 + -1.3
2,472,448 + DvMF_1995 0.12 -0.2
2,472,448 + DvMF_1995 0.12 -0.2
2,472,448 + DvMF_1995 0.12 -0.5
2,472,675 - DvMF_1995 0.34 -0.4
2,472,799 + DvMF_1995 0.45 -1.9
2,472,822 - DvMF_1995 0.47 -1.4
2,473,094 + DvMF_1995 0.73 -0.0

Or see this region's nucleotide sequence