Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1881 and DvMF_1882 are separated by 267 nucleotides DvMF_1882 and DvMF_1883 overlap by 8 nucleotides DvMF_1883 and DvMF_R0051 are separated by 570 nucleotides
DvMF_1881: DvMF_1881 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,315,847 to 2,317,625
_1881
DvMF_1882: DvMF_1882 - acetolactate synthase 1 regulatory subunit (RefSeq), at 2,317,893 to 2,318,258
_1882
DvMF_1883: DvMF_1883 - acetolactate synthase catalytic subunit (RefSeq), at 2,318,251 to 2,320,098
_1883
DvMF_R0051: DvMF_R0051 - tRNA-Thr (RefSeq), at 2,320,669 to 2,320,744
_R0051
Position (kb)
2318
2319
2320
2321 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2317.326 kb on + strand, within DvMF_1881 at 2317.336 kb on - strand, within DvMF_1881 at 2317.584 kb on - strand at 2317.944 kb on + strand, within DvMF_1882 at 2318.170 kb on + strand, within DvMF_1882 at 2318.436 kb on - strand, within DvMF_1883 at 2318.519 kb on - strand, within DvMF_1883 at 2318.558 kb on + strand, within DvMF_1883 at 2318.561 kb on - strand, within DvMF_1883 at 2318.566 kb on - strand, within DvMF_1883 at 2318.579 kb on + strand, within DvMF_1883 at 2318.724 kb on - strand, within DvMF_1883 at 2318.783 kb on + strand, within DvMF_1883 at 2318.792 kb on - strand, within DvMF_1883 at 2318.828 kb on + strand, within DvMF_1883 at 2318.828 kb on + strand, within DvMF_1883 at 2318.836 kb on - strand, within DvMF_1883 at 2318.836 kb on - strand, within DvMF_1883 at 2318.836 kb on - strand, within DvMF_1883 at 2318.836 kb on - strand, within DvMF_1883 at 2318.836 kb on - strand, within DvMF_1883 at 2318.921 kb on - strand, within DvMF_1883 at 2318.956 kb on + strand, within DvMF_1883 at 2319.055 kb on + strand, within DvMF_1883 at 2319.080 kb on + strand, within DvMF_1883 at 2319.157 kb on - strand, within DvMF_1883 at 2319.172 kb on - strand, within DvMF_1883 at 2319.318 kb on + strand, within DvMF_1883 at 2319.331 kb on - strand, within DvMF_1883 at 2319.367 kb on - strand, within DvMF_1883 at 2319.367 kb on - strand, within DvMF_1883 at 2319.381 kb on + strand, within DvMF_1883 at 2319.445 kb on + strand, within DvMF_1883 at 2319.699 kb on + strand, within DvMF_1883 at 2320.092 kb on - strand at 2320.137 kb on - strand at 2320.618 kb on + strand at 2320.729 kb on - strand, within DvMF_R0051 at 2320.729 kb on - strand, within DvMF_R0051 at 2320.975 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 2,317,326 + DvMF_1881 0.83 -0.7 2,317,336 - DvMF_1881 0.84 +0.0 2,317,584 - +0.4 2,317,944 + DvMF_1882 0.14 +0.8 2,318,170 + DvMF_1882 0.76 -0.6 2,318,436 - DvMF_1883 0.10 -1.4 2,318,519 - DvMF_1883 0.15 -0.2 2,318,558 + DvMF_1883 0.17 -0.6 2,318,561 - DvMF_1883 0.17 -0.8 2,318,566 - DvMF_1883 0.17 -0.8 2,318,579 + DvMF_1883 0.18 -1.5 2,318,724 - DvMF_1883 0.26 -0.2 2,318,783 + DvMF_1883 0.29 -2.8 2,318,792 - DvMF_1883 0.29 -2.1 2,318,828 + DvMF_1883 0.31 -0.8 2,318,828 + DvMF_1883 0.31 -1.7 2,318,836 - DvMF_1883 0.32 -0.5 2,318,836 - DvMF_1883 0.32 +0.7 2,318,836 - DvMF_1883 0.32 -1.2 2,318,836 - DvMF_1883 0.32 -2.0 2,318,836 - DvMF_1883 0.32 -1.1 2,318,921 - DvMF_1883 0.36 -1.3 2,318,956 + DvMF_1883 0.38 +0.1 2,319,055 + DvMF_1883 0.44 -0.5 2,319,080 + DvMF_1883 0.45 -0.8 2,319,157 - DvMF_1883 0.49 -1.4 2,319,172 - DvMF_1883 0.50 -1.8 2,319,318 + DvMF_1883 0.58 +0.1 2,319,331 - DvMF_1883 0.58 -0.4 2,319,367 - DvMF_1883 0.60 -0.9 2,319,367 - DvMF_1883 0.60 -1.3 2,319,381 + DvMF_1883 0.61 -2.0 2,319,445 + DvMF_1883 0.65 -1.0 2,319,699 + DvMF_1883 0.78 -0.1 2,320,092 - -0.8 2,320,137 - -1.0 2,320,618 + +0.1 2,320,729 - DvMF_R0051 0.79 +0.8 2,320,729 - DvMF_R0051 0.79 +0.4 2,320,975 + -1.0
Or see this region's nucleotide sequence