Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1883

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1881 and DvMF_1882 are separated by 267 nucleotidesDvMF_1882 and DvMF_1883 overlap by 8 nucleotidesDvMF_1883 and DvMF_R0051 are separated by 570 nucleotides DvMF_1881: DvMF_1881 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,315,847 to 2,317,625 _1881 DvMF_1882: DvMF_1882 - acetolactate synthase 1 regulatory subunit (RefSeq), at 2,317,893 to 2,318,258 _1882 DvMF_1883: DvMF_1883 - acetolactate synthase catalytic subunit (RefSeq), at 2,318,251 to 2,320,098 _1883 DvMF_R0051: DvMF_R0051 - tRNA-Thr (RefSeq), at 2,320,669 to 2,320,744 _R0051 Position (kb) 2318 2319 2320 2321Strain fitness (log2 ratio) -3 -2 -1 0 1at 2317.326 kb on + strand, within DvMF_1881at 2317.336 kb on - strand, within DvMF_1881at 2317.584 kb on - strandat 2317.944 kb on + strand, within DvMF_1882at 2318.170 kb on + strand, within DvMF_1882at 2318.436 kb on - strand, within DvMF_1883at 2318.519 kb on - strand, within DvMF_1883at 2318.558 kb on + strand, within DvMF_1883at 2318.561 kb on - strand, within DvMF_1883at 2318.566 kb on - strand, within DvMF_1883at 2318.579 kb on + strand, within DvMF_1883at 2318.724 kb on - strand, within DvMF_1883at 2318.783 kb on + strand, within DvMF_1883at 2318.792 kb on - strand, within DvMF_1883at 2318.828 kb on + strand, within DvMF_1883at 2318.828 kb on + strand, within DvMF_1883at 2318.836 kb on - strand, within DvMF_1883at 2318.836 kb on - strand, within DvMF_1883at 2318.836 kb on - strand, within DvMF_1883at 2318.836 kb on - strand, within DvMF_1883at 2318.836 kb on - strand, within DvMF_1883at 2318.921 kb on - strand, within DvMF_1883at 2318.956 kb on + strand, within DvMF_1883at 2319.055 kb on + strand, within DvMF_1883at 2319.080 kb on + strand, within DvMF_1883at 2319.157 kb on - strand, within DvMF_1883at 2319.172 kb on - strand, within DvMF_1883at 2319.318 kb on + strand, within DvMF_1883at 2319.331 kb on - strand, within DvMF_1883at 2319.367 kb on - strand, within DvMF_1883at 2319.367 kb on - strand, within DvMF_1883at 2319.381 kb on + strand, within DvMF_1883at 2319.445 kb on + strand, within DvMF_1883at 2319.699 kb on + strand, within DvMF_1883at 2320.092 kb on - strandat 2320.137 kb on - strandat 2320.618 kb on + strandat 2320.729 kb on - strand, within DvMF_R0051at 2320.729 kb on - strand, within DvMF_R0051at 2320.975 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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2,317,326 + DvMF_1881 0.83 -0.7
2,317,336 - DvMF_1881 0.84 +0.0
2,317,584 - +0.4
2,317,944 + DvMF_1882 0.14 +0.8
2,318,170 + DvMF_1882 0.76 -0.6
2,318,436 - DvMF_1883 0.10 -1.4
2,318,519 - DvMF_1883 0.15 -0.2
2,318,558 + DvMF_1883 0.17 -0.6
2,318,561 - DvMF_1883 0.17 -0.8
2,318,566 - DvMF_1883 0.17 -0.8
2,318,579 + DvMF_1883 0.18 -1.5
2,318,724 - DvMF_1883 0.26 -0.2
2,318,783 + DvMF_1883 0.29 -2.8
2,318,792 - DvMF_1883 0.29 -2.1
2,318,828 + DvMF_1883 0.31 -0.8
2,318,828 + DvMF_1883 0.31 -1.7
2,318,836 - DvMF_1883 0.32 -0.5
2,318,836 - DvMF_1883 0.32 +0.7
2,318,836 - DvMF_1883 0.32 -1.2
2,318,836 - DvMF_1883 0.32 -2.0
2,318,836 - DvMF_1883 0.32 -1.1
2,318,921 - DvMF_1883 0.36 -1.3
2,318,956 + DvMF_1883 0.38 +0.1
2,319,055 + DvMF_1883 0.44 -0.5
2,319,080 + DvMF_1883 0.45 -0.8
2,319,157 - DvMF_1883 0.49 -1.4
2,319,172 - DvMF_1883 0.50 -1.8
2,319,318 + DvMF_1883 0.58 +0.1
2,319,331 - DvMF_1883 0.58 -0.4
2,319,367 - DvMF_1883 0.60 -0.9
2,319,367 - DvMF_1883 0.60 -1.3
2,319,381 + DvMF_1883 0.61 -2.0
2,319,445 + DvMF_1883 0.65 -1.0
2,319,699 + DvMF_1883 0.78 -0.1
2,320,092 - -0.8
2,320,137 - -1.0
2,320,618 + +0.1
2,320,729 - DvMF_R0051 0.79 +0.8
2,320,729 - DvMF_R0051 0.79 +0.4
2,320,975 + -1.0

Or see this region's nucleotide sequence