Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1806

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1805 and DvMF_1806 are separated by 398 nucleotidesDvMF_1806 and DvMF_1807 are separated by 483 nucleotides DvMF_1805: DvMF_1805 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 2,205,877 to 2,206,491 _1805 DvMF_1806: DvMF_1806 - transcriptional regulator, MucR family (RefSeq), at 2,206,890 to 2,207,291 _1806 DvMF_1807: DvMF_1807 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,207,775 to 2,208,737 _1807 Position (kb) 2206 2207 2208Strain fitness (log2 ratio) -1 0 1at 2205.999 kb on + strand, within DvMF_1805at 2206.065 kb on - strand, within DvMF_1805at 2206.065 kb on - strand, within DvMF_1805at 2206.196 kb on + strand, within DvMF_1805at 2206.238 kb on + strand, within DvMF_1805at 2206.241 kb on - strand, within DvMF_1805at 2206.286 kb on + strand, within DvMF_1805at 2207.447 kb on + strandat 2208.042 kb on + strand, within DvMF_1807at 2208.049 kb on - strand, within DvMF_1807at 2208.087 kb on - strand, within DvMF_1807

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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2,205,999 + DvMF_1805 0.20 -0.8
2,206,065 - DvMF_1805 0.31 -0.6
2,206,065 - DvMF_1805 0.31 +0.4
2,206,196 + DvMF_1805 0.52 -0.4
2,206,238 + DvMF_1805 0.59 -1.1
2,206,241 - DvMF_1805 0.59 +0.4
2,206,286 + DvMF_1805 0.67 -1.7
2,207,447 + -1.1
2,208,042 + DvMF_1807 0.28 -1.0
2,208,049 - DvMF_1807 0.28 -1.4
2,208,087 - DvMF_1807 0.32 -0.3

Or see this region's nucleotide sequence