Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1733

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1731 and DvMF_1732 overlap by 4 nucleotidesDvMF_1732 and DvMF_1733 are separated by 11 nucleotidesDvMF_1733 and DvMF_1734 are separated by 144 nucleotides DvMF_1731: DvMF_1731 - cytochrome c class III (RefSeq), at 2,116,495 to 2,116,899 _1731 DvMF_1732: DvMF_1732 - hydrogenase (NiFe) small subunit HydA (RefSeq), at 2,116,896 to 2,117,864 _1732 DvMF_1733: DvMF_1733 - nickel-dependent hydrogenase large subunit (RefSeq), at 2,117,876 to 2,119,525 _1733 DvMF_1734: DvMF_1734 - ADP-L-glycero-D-manno-heptose-6-epimerase (RefSeq), at 2,119,670 to 2,120,653 _1734 Position (kb) 2117 2118 2119 2120Strain fitness (log2 ratio) -2 -1 0 1 2at 2117.132 kb on - strand, within DvMF_1732at 2117.351 kb on + strand, within DvMF_1732at 2117.534 kb on + strand, within DvMF_1732at 2117.577 kb on - strand, within DvMF_1732at 2117.577 kb on - strand, within DvMF_1732at 2117.585 kb on + strand, within DvMF_1732at 2117.701 kb on + strand, within DvMF_1732at 2117.709 kb on - strand, within DvMF_1732at 2117.723 kb on + strand, within DvMF_1732at 2117.778 kb on + strandat 2117.817 kb on - strandat 2117.823 kb on - strandat 2117.926 kb on + strandat 2118.052 kb on + strand, within DvMF_1733at 2118.077 kb on - strand, within DvMF_1733at 2118.133 kb on + strand, within DvMF_1733at 2118.187 kb on + strand, within DvMF_1733at 2118.291 kb on + strand, within DvMF_1733at 2118.665 kb on + strand, within DvMF_1733at 2118.689 kb on - strand, within DvMF_1733at 2118.943 kb on + strand, within DvMF_1733at 2118.950 kb on + strand, within DvMF_1733at 2119.094 kb on + strand, within DvMF_1733at 2119.231 kb on + strand, within DvMF_1733at 2119.668 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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2,117,132 - DvMF_1732 0.24 +0.0
2,117,351 + DvMF_1732 0.47 -1.2
2,117,534 + DvMF_1732 0.66 -0.6
2,117,577 - DvMF_1732 0.70 -0.1
2,117,577 - DvMF_1732 0.70 -1.0
2,117,585 + DvMF_1732 0.71 +1.8
2,117,701 + DvMF_1732 0.83 -0.9
2,117,709 - DvMF_1732 0.84 -0.7
2,117,723 + DvMF_1732 0.85 +0.0
2,117,778 + +0.7
2,117,817 - -1.6
2,117,823 - +0.0
2,117,926 + -0.4
2,118,052 + DvMF_1733 0.11 -0.5
2,118,077 - DvMF_1733 0.12 -0.8
2,118,133 + DvMF_1733 0.16 -0.7
2,118,187 + DvMF_1733 0.19 +0.3
2,118,291 + DvMF_1733 0.25 +0.2
2,118,665 + DvMF_1733 0.48 -1.5
2,118,689 - DvMF_1733 0.49 -0.9
2,118,943 + DvMF_1733 0.65 -0.1
2,118,950 + DvMF_1733 0.65 -2.0
2,119,094 + DvMF_1733 0.74 -1.4
2,119,231 + DvMF_1733 0.82 -0.4
2,119,668 - -0.9

Or see this region's nucleotide sequence