Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1727

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1725 and DvMF_1726 are separated by 369 nucleotidesDvMF_1726 and DvMF_1727 are separated by 172 nucleotidesDvMF_1727 and DvMF_1728 overlap by 4 nucleotides DvMF_1725: DvMF_1725 - protein of unknown function UPF0150 (RefSeq), at 2,108,877 to 2,109,284 _1725 DvMF_1726: DvMF_1726 - hypothetical protein (RefSeq), at 2,109,654 to 2,109,977 _1726 DvMF_1727: DvMF_1727 - hypothetical protein (RefSeq), at 2,110,150 to 2,110,947 _1727 DvMF_1728: DvMF_1728 - ABC transporter related (RefSeq), at 2,110,944 to 2,111,777 _1728 Position (kb) 2110 2111Strain fitness (log2 ratio) -2 -1 0 1 2at 2109.390 kb on - strandat 2109.571 kb on + strandat 2109.571 kb on + strandat 2109.721 kb on + strand, within DvMF_1726at 2109.891 kb on + strand, within DvMF_1726at 2110.212 kb on + strandat 2110.235 kb on - strand, within DvMF_1727at 2110.580 kb on - strand, within DvMF_1727at 2110.606 kb on + strand, within DvMF_1727at 2110.655 kb on - strand, within DvMF_1727at 2110.778 kb on - strand, within DvMF_1727at 2110.792 kb on - strand, within DvMF_1727at 2110.794 kb on + strand, within DvMF_1727at 2111.095 kb on - strand, within DvMF_1728at 2111.122 kb on + strand, within DvMF_1728at 2111.175 kb on + strand, within DvMF_1728at 2111.272 kb on - strand, within DvMF_1728at 2111.539 kb on + strand, within DvMF_1728at 2111.681 kb on + strand, within DvMF_1728at 2111.865 kb on + strandat 2111.905 kb on - strandat 2111.920 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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2,109,390 - -0.5
2,109,571 + +0.2
2,109,571 + -2.5
2,109,721 + DvMF_1726 0.21 -1.0
2,109,891 + DvMF_1726 0.73 -1.9
2,110,212 + -0.1
2,110,235 - DvMF_1727 0.11 -0.4
2,110,580 - DvMF_1727 0.54 -0.7
2,110,606 + DvMF_1727 0.57 +2.1
2,110,655 - DvMF_1727 0.63 -1.0
2,110,778 - DvMF_1727 0.79 -0.1
2,110,792 - DvMF_1727 0.80 -0.8
2,110,794 + DvMF_1727 0.81 -0.8
2,111,095 - DvMF_1728 0.18 -1.0
2,111,122 + DvMF_1728 0.21 -0.8
2,111,175 + DvMF_1728 0.28 -1.7
2,111,272 - DvMF_1728 0.39 -0.8
2,111,539 + DvMF_1728 0.71 -0.6
2,111,681 + DvMF_1728 0.88 -0.0
2,111,865 + +1.1
2,111,905 - +1.1
2,111,920 + -1.0

Or see this region's nucleotide sequence