Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1706 and DvMF_1707 are separated by 306 nucleotides DvMF_1707 and DvMF_1708 are separated by 61 nucleotides DvMF_1708 and DvMF_1709 are separated by 105 nucleotides
DvMF_1706: DvMF_1706 - glucosamine/fructose-6-phosphate aminotransferase, isomerizing (RefSeq), at 2,082,972 to 2,084,795
_1706
DvMF_1707: DvMF_1707 - protein of unknown function UPF0118 (RefSeq), at 2,085,102 to 2,086,616
_1707
DvMF_1708: DvMF_1708 - transcriptional regulator, Crp/Fnr family (RefSeq), at 2,086,678 to 2,087,367
_1708
DvMF_1709: DvMF_1709 - 4Fe-4S ferredoxin, iron-sulfur binding domain protein (RefSeq), at 2,087,473 to 2,087,829
_1709
Position (kb)
2085
2086
2087 Strain fitness (log2 ratio)
-1
0
1
2 at 2084.977 kb on - strand at 2085.329 kb on - strand, within DvMF_1707 at 2085.377 kb on + strand, within DvMF_1707 at 2085.378 kb on - strand, within DvMF_1707 at 2085.400 kb on + strand, within DvMF_1707 at 2085.452 kb on - strand, within DvMF_1707 at 2085.457 kb on + strand, within DvMF_1707 at 2085.783 kb on - strand, within DvMF_1707 at 2086.016 kb on - strand, within DvMF_1707 at 2086.272 kb on - strand, within DvMF_1707 at 2086.384 kb on + strand, within DvMF_1707 at 2086.392 kb on - strand, within DvMF_1707 at 2086.449 kb on + strand, within DvMF_1707 at 2086.604 kb on - strand at 2086.609 kb on - strand at 2086.678 kb on + strand at 2086.678 kb on + strand at 2086.937 kb on - strand, within DvMF_1708 at 2086.992 kb on + strand, within DvMF_1708 at 2086.994 kb on - strand, within DvMF_1708 at 2087.459 kb on + strand at 2087.477 kb on - strand at 2087.601 kb on - strand, within DvMF_1709 at 2087.606 kb on + strand, within DvMF_1709 at 2087.606 kb on + strand, within DvMF_1709
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 2,084,977 - +0.0 2,085,329 - DvMF_1707 0.15 +0.3 2,085,377 + DvMF_1707 0.18 -0.6 2,085,378 - DvMF_1707 0.18 -1.4 2,085,400 + DvMF_1707 0.20 +0.3 2,085,452 - DvMF_1707 0.23 -0.1 2,085,457 + DvMF_1707 0.23 -0.9 2,085,783 - DvMF_1707 0.45 -0.7 2,086,016 - DvMF_1707 0.60 -0.9 2,086,272 - DvMF_1707 0.77 -0.9 2,086,384 + DvMF_1707 0.85 +2.1 2,086,392 - DvMF_1707 0.85 -0.5 2,086,449 + DvMF_1707 0.89 -1.4 2,086,604 - -1.1 2,086,609 - -0.9 2,086,678 + -1.0 2,086,678 + -1.5 2,086,937 - DvMF_1708 0.38 -0.2 2,086,992 + DvMF_1708 0.46 -0.1 2,086,994 - DvMF_1708 0.46 -1.2 2,087,459 + -0.8 2,087,477 - -0.1 2,087,601 - DvMF_1709 0.36 -0.2 2,087,606 + DvMF_1709 0.37 -1.1 2,087,606 + DvMF_1709 0.37 -1.5
Or see this region's nucleotide sequence