Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1683 and DvMF_1684 are separated by 16 nucleotides DvMF_1684 and DvMF_1685 are separated by 29 nucleotides DvMF_1685 and DvMF_1686 are separated by 157 nucleotides DvMF_1686 and DvMF_1687 are separated by 341 nucleotides
DvMF_1683: DvMF_1683 - protein of unknown function DUF1351 (RefSeq), at 2,051,587 to 2,052,486
_1683
DvMF_1684: DvMF_1684 - hypothetical protein (RefSeq), at 2,052,503 to 2,053,411
_1684
DvMF_1685: DvMF_1685 - hypothetical protein (RefSeq), at 2,053,441 to 2,053,764
_1685
DvMF_1686: DvMF_1686 - hypothetical protein (RefSeq), at 2,053,922 to 2,054,101
_1686
DvMF_1687: DvMF_1687 - integrase family protein (RefSeq), at 2,054,443 to 2,055,510
_1687
Position (kb)
2053
2054 Strain fitness (log2 ratio)
-2
-1
0
1 at 2052.728 kb on + strand, within DvMF_1684 at 2053.030 kb on + strand, within DvMF_1684 at 2053.030 kb on + strand, within DvMF_1684 at 2053.030 kb on + strand, within DvMF_1684 at 2053.030 kb on + strand, within DvMF_1684 at 2053.030 kb on + strand, within DvMF_1684 at 2053.038 kb on - strand, within DvMF_1684 at 2053.038 kb on - strand, within DvMF_1684 at 2053.419 kb on + strand at 2053.419 kb on + strand at 2053.427 kb on - strand at 2053.427 kb on - strand at 2053.578 kb on + strand, within DvMF_1685 at 2053.719 kb on + strand, within DvMF_1685 at 2053.727 kb on - strand, within DvMF_1685 at 2053.737 kb on - strand at 2053.918 kb on - strand at 2053.957 kb on + strand, within DvMF_1686 at 2053.975 kb on - strand, within DvMF_1686 at 2054.261 kb on - strand at 2054.264 kb on + strand at 2054.375 kb on + strand at 2054.425 kb on + strand at 2054.427 kb on + strand at 2054.534 kb on - strand at 2054.537 kb on - strand at 2054.591 kb on - strand, within DvMF_1687 at 2054.714 kb on + strand, within DvMF_1687
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 2,052,728 + DvMF_1684 0.25 -0.7 2,053,030 + DvMF_1684 0.58 -0.6 2,053,030 + DvMF_1684 0.58 -1.5 2,053,030 + DvMF_1684 0.58 -1.1 2,053,030 + DvMF_1684 0.58 -0.7 2,053,030 + DvMF_1684 0.58 -0.3 2,053,038 - DvMF_1684 0.59 -1.2 2,053,038 - DvMF_1684 0.59 +1.3 2,053,419 + -0.8 2,053,419 + -0.5 2,053,427 - +0.3 2,053,427 - +0.3 2,053,578 + DvMF_1685 0.42 -1.0 2,053,719 + DvMF_1685 0.86 -1.5 2,053,727 - DvMF_1685 0.88 -0.5 2,053,737 - -2.3 2,053,918 - -0.9 2,053,957 + DvMF_1686 0.19 +0.1 2,053,975 - DvMF_1686 0.29 -0.6 2,054,261 - -1.1 2,054,264 + -1.2 2,054,375 + -1.6 2,054,425 + -1.6 2,054,427 + +0.1 2,054,534 - -1.2 2,054,537 - -0.2 2,054,591 - DvMF_1687 0.14 -0.9 2,054,714 + DvMF_1687 0.25 -0.2
Or see this region's nucleotide sequence