Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1661

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1659 and DvMF_1660 are separated by 72 nucleotidesDvMF_1660 and DvMF_1661 are separated by 525 nucleotidesDvMF_1661 and DvMF_1662 overlap by 19 nucleotidesDvMF_1662 and DvMF_1663 overlap by 29 nucleotidesDvMF_1663 and DvMF_1664 are separated by 2 nucleotides DvMF_1659: DvMF_1659 - putative phage terminase, small subunit, P27 family (RefSeq), at 2,036,658 to 2,037,131 _1659 DvMF_1660: DvMF_1660 - HNH endonuclease (RefSeq), at 2,037,204 to 2,037,599 _1660 DvMF_1661: DvMF_1661 - hypothetical protein (RefSeq), at 2,038,125 to 2,038,472 _1661 DvMF_1662: DvMF_1662 - hypothetical protein (RefSeq), at 2,038,454 to 2,038,684 _1662 DvMF_1663: DvMF_1663 - hypothetical protein (RefSeq), at 2,038,656 to 2,039,039 _1663 DvMF_1664: DvMF_1664 - hypothetical protein (RefSeq), at 2,039,042 to 2,039,449 _1664 Position (kb) 2038 2039Strain fitness (log2 ratio) -1 0 1at 2037.201 kb on + strandat 2037.254 kb on - strand, within DvMF_1660at 2037.285 kb on - strand, within DvMF_1660at 2037.526 kb on - strand, within DvMF_1660at 2037.600 kb on - strandat 2037.772 kb on + strandat 2037.775 kb on - strandat 2037.780 kb on - strandat 2037.780 kb on - strandat 2037.825 kb on - strandat 2037.879 kb on - strandat 2038.111 kb on - strandat 2038.165 kb on + strand, within DvMF_1661at 2038.394 kb on - strand, within DvMF_1661at 2038.459 kb on - strandat 2038.505 kb on + strand, within DvMF_1662at 2038.523 kb on - strand, within DvMF_1662at 2038.551 kb on - strand, within DvMF_1662at 2038.615 kb on + strand, within DvMF_1662at 2038.671 kb on + strandat 2038.701 kb on - strand, within DvMF_1663at 2038.889 kb on + strand, within DvMF_1663at 2038.935 kb on - strand, within DvMF_1663at 2038.947 kb on + strand, within DvMF_1663at 2039.104 kb on + strand, within DvMF_1664at 2039.276 kb on - strand, within DvMF_1664at 2039.276 kb on - strand, within DvMF_1664at 2039.371 kb on - strand, within DvMF_1664

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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2,037,201 + -1.6
2,037,254 - DvMF_1660 0.13 +1.0
2,037,285 - DvMF_1660 0.20 -0.9
2,037,526 - DvMF_1660 0.81 -1.4
2,037,600 - -0.8
2,037,772 + -0.7
2,037,775 - +0.7
2,037,780 - -0.5
2,037,780 - -1.5
2,037,825 - -0.1
2,037,879 - -1.3
2,038,111 - +0.2
2,038,165 + DvMF_1661 0.11 +0.7
2,038,394 - DvMF_1661 0.77 -0.0
2,038,459 - -0.2
2,038,505 + DvMF_1662 0.22 -0.7
2,038,523 - DvMF_1662 0.30 +0.3
2,038,551 - DvMF_1662 0.42 -0.8
2,038,615 + DvMF_1662 0.70 -0.2
2,038,671 + -1.3
2,038,701 - DvMF_1663 0.12 -1.2
2,038,889 + DvMF_1663 0.61 -1.3
2,038,935 - DvMF_1663 0.73 -0.6
2,038,947 + DvMF_1663 0.76 +0.2
2,039,104 + DvMF_1664 0.15 -0.8
2,039,276 - DvMF_1664 0.57 -0.8
2,039,276 - DvMF_1664 0.57 -0.6
2,039,371 - DvMF_1664 0.81 -0.4

Or see this region's nucleotide sequence