Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1659 and DvMF_1660 are separated by 72 nucleotides DvMF_1660 and DvMF_1661 are separated by 525 nucleotides DvMF_1661 and DvMF_1662 overlap by 19 nucleotides DvMF_1662 and DvMF_1663 overlap by 29 nucleotides DvMF_1663 and DvMF_1664 are separated by 2 nucleotides
DvMF_1659: DvMF_1659 - putative phage terminase, small subunit, P27 family (RefSeq), at 2,036,658 to 2,037,131
_1659
DvMF_1660: DvMF_1660 - HNH endonuclease (RefSeq), at 2,037,204 to 2,037,599
_1660
DvMF_1661: DvMF_1661 - hypothetical protein (RefSeq), at 2,038,125 to 2,038,472
_1661
DvMF_1662: DvMF_1662 - hypothetical protein (RefSeq), at 2,038,454 to 2,038,684
_1662
DvMF_1663: DvMF_1663 - hypothetical protein (RefSeq), at 2,038,656 to 2,039,039
_1663
DvMF_1664: DvMF_1664 - hypothetical protein (RefSeq), at 2,039,042 to 2,039,449
_1664
Position (kb)
2038
2039 Strain fitness (log2 ratio)
-1
0
1 at 2037.201 kb on + strand at 2037.254 kb on - strand, within DvMF_1660 at 2037.285 kb on - strand, within DvMF_1660 at 2037.526 kb on - strand, within DvMF_1660 at 2037.600 kb on - strand at 2037.772 kb on + strand at 2037.775 kb on - strand at 2037.780 kb on - strand at 2037.780 kb on - strand at 2037.825 kb on - strand at 2037.879 kb on - strand at 2038.111 kb on - strand at 2038.165 kb on + strand, within DvMF_1661 at 2038.394 kb on - strand, within DvMF_1661 at 2038.459 kb on - strand at 2038.505 kb on + strand, within DvMF_1662 at 2038.523 kb on - strand, within DvMF_1662 at 2038.551 kb on - strand, within DvMF_1662 at 2038.615 kb on + strand, within DvMF_1662 at 2038.671 kb on + strand at 2038.701 kb on - strand, within DvMF_1663 at 2038.889 kb on + strand, within DvMF_1663 at 2038.935 kb on - strand, within DvMF_1663 at 2038.947 kb on + strand, within DvMF_1663 at 2039.104 kb on + strand, within DvMF_1664 at 2039.276 kb on - strand, within DvMF_1664 at 2039.276 kb on - strand, within DvMF_1664 at 2039.371 kb on - strand, within DvMF_1664
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 2,037,201 + -1.6 2,037,254 - DvMF_1660 0.13 +1.0 2,037,285 - DvMF_1660 0.20 -0.9 2,037,526 - DvMF_1660 0.81 -1.4 2,037,600 - -0.8 2,037,772 + -0.7 2,037,775 - +0.7 2,037,780 - -0.5 2,037,780 - -1.5 2,037,825 - -0.1 2,037,879 - -1.3 2,038,111 - +0.2 2,038,165 + DvMF_1661 0.11 +0.7 2,038,394 - DvMF_1661 0.77 -0.0 2,038,459 - -0.2 2,038,505 + DvMF_1662 0.22 -0.7 2,038,523 - DvMF_1662 0.30 +0.3 2,038,551 - DvMF_1662 0.42 -0.8 2,038,615 + DvMF_1662 0.70 -0.2 2,038,671 + -1.3 2,038,701 - DvMF_1663 0.12 -1.2 2,038,889 + DvMF_1663 0.61 -1.3 2,038,935 - DvMF_1663 0.73 -0.6 2,038,947 + DvMF_1663 0.76 +0.2 2,039,104 + DvMF_1664 0.15 -0.8 2,039,276 - DvMF_1664 0.57 -0.8 2,039,276 - DvMF_1664 0.57 -0.6 2,039,371 - DvMF_1664 0.81 -0.4
Or see this region's nucleotide sequence