Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1633 and DvMF_1634 are separated by 327 nucleotides DvMF_1634 and DvMF_1635 overlap by 17 nucleotides DvMF_1635 and DvMF_1636 are separated by 51 nucleotides DvMF_1636 and DvMF_1637 are separated by 3 nucleotides DvMF_1637 and DvMF_1638 are separated by 2 nucleotides
DvMF_1633: DvMF_1633 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 2,013,655 to 2,015,985
_1633
DvMF_1634: DvMF_1634 - phage protein (RefSeq), at 2,016,313 to 2,016,570
_1634
DvMF_1635: DvMF_1635 - transcriptional regulator, XRE family (RefSeq), at 2,016,554 to 2,016,892
_1635
DvMF_1636: DvMF_1636 - hypothetical protein (RefSeq), at 2,016,944 to 2,017,444
_1636
DvMF_1637: DvMF_1637 - hypothetical protein (RefSeq), at 2,017,448 to 2,017,771
_1637
DvMF_1638: DvMF_1638 - hypothetical protein (RefSeq), at 2,017,774 to 2,018,379
_1638
Position (kb)
2016
2017 Strain fitness (log2 ratio)
-1
0
1 at 2015.671 kb on + strand, within DvMF_1633 at 2015.679 kb on - strand, within DvMF_1633 at 2015.681 kb on + strand, within DvMF_1633 at 2015.914 kb on + strand at 2015.979 kb on - strand at 2016.431 kb on + strand, within DvMF_1634 at 2016.900 kb on - strand at 2017.129 kb on + strand, within DvMF_1636 at 2017.193 kb on - strand, within DvMF_1636 at 2017.358 kb on - strand, within DvMF_1636 at 2017.449 kb on - strand at 2017.471 kb on - strand at 2017.670 kb on - strand, within DvMF_1637 at 2017.732 kb on + strand, within DvMF_1637 at 2017.807 kb on - strand at 2017.818 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 2,015,671 + DvMF_1633 0.86 +0.7 2,015,679 - DvMF_1633 0.87 -0.9 2,015,681 + DvMF_1633 0.87 -0.9 2,015,914 + -0.7 2,015,979 - -0.7 2,016,431 + DvMF_1634 0.46 -1.2 2,016,900 - -1.1 2,017,129 + DvMF_1636 0.37 -0.5 2,017,193 - DvMF_1636 0.50 +0.0 2,017,358 - DvMF_1636 0.83 -0.6 2,017,449 - -0.8 2,017,471 - -0.8 2,017,670 - DvMF_1637 0.69 -0.9 2,017,732 + DvMF_1637 0.88 -0.0 2,017,807 - +0.1 2,017,818 + +0.4
Or see this region's nucleotide sequence