Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1635

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1633 and DvMF_1634 are separated by 327 nucleotidesDvMF_1634 and DvMF_1635 overlap by 17 nucleotidesDvMF_1635 and DvMF_1636 are separated by 51 nucleotidesDvMF_1636 and DvMF_1637 are separated by 3 nucleotidesDvMF_1637 and DvMF_1638 are separated by 2 nucleotides DvMF_1633: DvMF_1633 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 2,013,655 to 2,015,985 _1633 DvMF_1634: DvMF_1634 - phage protein (RefSeq), at 2,016,313 to 2,016,570 _1634 DvMF_1635: DvMF_1635 - transcriptional regulator, XRE family (RefSeq), at 2,016,554 to 2,016,892 _1635 DvMF_1636: DvMF_1636 - hypothetical protein (RefSeq), at 2,016,944 to 2,017,444 _1636 DvMF_1637: DvMF_1637 - hypothetical protein (RefSeq), at 2,017,448 to 2,017,771 _1637 DvMF_1638: DvMF_1638 - hypothetical protein (RefSeq), at 2,017,774 to 2,018,379 _1638 Position (kb) 2016 2017Strain fitness (log2 ratio) -1 0 1at 2015.671 kb on + strand, within DvMF_1633at 2015.679 kb on - strand, within DvMF_1633at 2015.681 kb on + strand, within DvMF_1633at 2015.914 kb on + strandat 2015.979 kb on - strandat 2016.431 kb on + strand, within DvMF_1634at 2016.900 kb on - strandat 2017.129 kb on + strand, within DvMF_1636at 2017.193 kb on - strand, within DvMF_1636at 2017.358 kb on - strand, within DvMF_1636at 2017.449 kb on - strandat 2017.471 kb on - strandat 2017.670 kb on - strand, within DvMF_1637at 2017.732 kb on + strand, within DvMF_1637at 2017.807 kb on - strandat 2017.818 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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2,015,671 + DvMF_1633 0.86 +0.7
2,015,679 - DvMF_1633 0.87 -0.9
2,015,681 + DvMF_1633 0.87 -0.9
2,015,914 + -0.7
2,015,979 - -0.7
2,016,431 + DvMF_1634 0.46 -1.2
2,016,900 - -1.1
2,017,129 + DvMF_1636 0.37 -0.5
2,017,193 - DvMF_1636 0.50 +0.0
2,017,358 - DvMF_1636 0.83 -0.6
2,017,449 - -0.8
2,017,471 - -0.8
2,017,670 - DvMF_1637 0.69 -0.9
2,017,732 + DvMF_1637 0.88 -0.0
2,017,807 - +0.1
2,017,818 + +0.4

Or see this region's nucleotide sequence