Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1597

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1596 and DvMF_1597 are separated by 6 nucleotidesDvMF_1597 and DvMF_1598 are separated by 203 nucleotidesDvMF_1598 and DvMF_1599 are separated by 1 nucleotides DvMF_1596: DvMF_1596 - NADH dehydrogenase (quinone) (RefSeq), at 1,967,543 to 1,968,763 _1596 DvMF_1597: DvMF_1597 - NADH dehydrogenase (quinone) (RefSeq), at 1,968,770 to 1,969,744 _1597 DvMF_1598: DvMF_1598 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,969,948 to 1,970,571 _1598 DvMF_1599: DvMF_1599 - NADH-ubiquinone/plastoquinone oxidoreductase chain 6 (RefSeq), at 1,970,573 to 1,971,079 _1599 Position (kb) 1968 1969 1970Strain fitness (log2 ratio) -1 0 1at 1967.833 kb on + strand, within DvMF_1596at 1968.114 kb on - strand, within DvMF_1596at 1968.288 kb on - strand, within DvMF_1596at 1968.368 kb on + strand, within DvMF_1596at 1968.514 kb on - strand, within DvMF_1596at 1968.516 kb on - strand, within DvMF_1596at 1968.607 kb on - strand, within DvMF_1596at 1969.124 kb on - strand, within DvMF_1597at 1969.174 kb on - strand, within DvMF_1597at 1969.261 kb on + strand, within DvMF_1597at 1969.344 kb on - strand, within DvMF_1597at 1969.416 kb on - strand, within DvMF_1597at 1969.661 kb on - strandat 1969.749 kb on + strandat 1969.941 kb on + strandat 1970.141 kb on - strand, within DvMF_1598at 1970.360 kb on - strand, within DvMF_1598at 1970.541 kb on - strandat 1970.588 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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1,967,833 + DvMF_1596 0.24 -1.1
1,968,114 - DvMF_1596 0.47 -1.4
1,968,288 - DvMF_1596 0.61 +0.1
1,968,368 + DvMF_1596 0.68 -0.6
1,968,514 - DvMF_1596 0.80 -0.5
1,968,516 - DvMF_1596 0.80 -1.2
1,968,607 - DvMF_1596 0.87 +0.5
1,969,124 - DvMF_1597 0.36 -0.6
1,969,174 - DvMF_1597 0.41 -0.3
1,969,261 + DvMF_1597 0.50 -0.1
1,969,344 - DvMF_1597 0.59 -0.2
1,969,416 - DvMF_1597 0.66 -0.9
1,969,661 - -0.5
1,969,749 + -0.4
1,969,941 + -0.9
1,970,141 - DvMF_1598 0.31 +1.1
1,970,360 - DvMF_1598 0.66 -0.6
1,970,541 - -0.8
1,970,588 + -0.3

Or see this region's nucleotide sequence