Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1506

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1505 and DvMF_1506 are separated by 431 nucleotidesDvMF_1506 and DvMF_1507 are separated by 228 nucleotides DvMF_1505: DvMF_1505 - protein of unknown function DUF140 (RefSeq), at 1,857,111 to 1,858,403 _1505 DvMF_1506: DvMF_1506 - hypothetical protein (RefSeq), at 1,858,835 to 1,859,107 _1506 DvMF_1507: DvMF_1507 - Extradiol ring-cleavage dioxygenase class III protein subunit B (RefSeq), at 1,859,336 to 1,860,139 _1507 Position (kb) 1858 1859 1860Strain fitness (log2 ratio) -2 -1 0 1 2at 1857.852 kb on + strand, within DvMF_1505at 1857.889 kb on - strand, within DvMF_1505at 1858.124 kb on - strand, within DvMF_1505at 1858.212 kb on + strand, within DvMF_1505at 1858.433 kb on + strandat 1858.553 kb on + strandat 1858.689 kb on + strandat 1858.754 kb on + strandat 1858.942 kb on + strand, within DvMF_1506at 1858.953 kb on + strand, within DvMF_1506at 1859.056 kb on - strand, within DvMF_1506at 1859.081 kb on + strandat 1859.091 kb on + strandat 1859.161 kb on + strandat 1859.709 kb on - strand, within DvMF_1507at 1859.892 kb on + strand, within DvMF_1507at 1859.951 kb on + strand, within DvMF_1507at 1859.971 kb on + strand, within DvMF_1507at 1860.040 kb on + strand, within DvMF_1507

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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1,857,852 + DvMF_1505 0.57 +0.2
1,857,889 - DvMF_1505 0.60 -1.9
1,858,124 - DvMF_1505 0.78 -1.4
1,858,212 + DvMF_1505 0.85 -1.1
1,858,433 + -0.8
1,858,553 + -2.6
1,858,689 + -1.8
1,858,754 + -0.9
1,858,942 + DvMF_1506 0.39 -1.4
1,858,953 + DvMF_1506 0.43 -1.4
1,859,056 - DvMF_1506 0.81 -1.2
1,859,081 + -2.3
1,859,091 + -2.3
1,859,161 + -0.6
1,859,709 - DvMF_1507 0.46 -0.7
1,859,892 + DvMF_1507 0.69 +2.3
1,859,951 + DvMF_1507 0.76 -0.7
1,859,971 + DvMF_1507 0.79 -0.8
1,860,040 + DvMF_1507 0.88 -1.0

Or see this region's nucleotide sequence