Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1417

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1414 and DvMF_1415 are separated by 154 nucleotidesDvMF_1415 and DvMF_1416 are separated by 24 nucleotidesDvMF_1416 and DvMF_1417 are separated by 51 nucleotidesDvMF_1417 and DvMF_1418 are separated by 61 nucleotides DvMF_1414: DvMF_1414 - Phosphoglycerate mutase (RefSeq), at 1,728,361 to 1,729,626 _1414 DvMF_1415: DvMF_1415 - hypothetical protein (RefSeq), at 1,729,781 to 1,730,092 _1415 DvMF_1416: DvMF_1416 - hypothetical protein (RefSeq), at 1,730,117 to 1,730,554 _1416 DvMF_1417: DvMF_1417 - heavy metal translocating P-type ATPase (RefSeq), at 1,730,606 to 1,733,521 _1417 DvMF_1418: DvMF_1418 - hypothetical protein (RefSeq), at 1,733,583 to 1,733,864 _1418 Position (kb) 1730 1731 1732 1733 1734Strain fitness (log2 ratio) -2 -1 0 1at 1729.990 kb on + strand, within DvMF_1415at 1730.094 kb on - strandat 1730.184 kb on + strand, within DvMF_1416at 1730.499 kb on - strand, within DvMF_1416at 1730.514 kb on + strandat 1730.698 kb on - strandat 1730.755 kb on - strandat 1731.011 kb on + strand, within DvMF_1417at 1731.177 kb on - strand, within DvMF_1417at 1731.185 kb on + strand, within DvMF_1417at 1731.270 kb on - strand, within DvMF_1417at 1731.322 kb on + strand, within DvMF_1417at 1731.705 kb on + strand, within DvMF_1417at 1731.744 kb on + strand, within DvMF_1417at 1732.128 kb on + strand, within DvMF_1417at 1732.203 kb on + strand, within DvMF_1417at 1732.340 kb on + strand, within DvMF_1417at 1732.340 kb on + strand, within DvMF_1417at 1732.373 kb on + strand, within DvMF_1417at 1732.474 kb on + strand, within DvMF_1417at 1732.647 kb on + strand, within DvMF_1417at 1732.655 kb on - strand, within DvMF_1417at 1732.792 kb on - strand, within DvMF_1417at 1732.807 kb on + strand, within DvMF_1417at 1732.951 kb on + strand, within DvMF_1417at 1732.975 kb on - strand, within DvMF_1417at 1733.047 kb on - strand, within DvMF_1417at 1733.206 kb on + strand, within DvMF_1417at 1733.352 kb on + strandat 1733.576 kb on + strandat 1733.616 kb on - strand, within DvMF_1418at 1733.643 kb on - strand, within DvMF_1418at 1733.963 kb on + strandat 1734.364 kb on + strandat 1734.388 kb on - strandat 1734.474 kb on + strandat 1734.504 kb on - strandat 1734.511 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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1,729,990 + DvMF_1415 0.67 -0.7
1,730,094 - -0.8
1,730,184 + DvMF_1416 0.15 -0.8
1,730,499 - DvMF_1416 0.87 -0.9
1,730,514 + -0.9
1,730,698 - -0.5
1,730,755 - -1.1
1,731,011 + DvMF_1417 0.14 -0.9
1,731,177 - DvMF_1417 0.20 -0.4
1,731,185 + DvMF_1417 0.20 -0.4
1,731,270 - DvMF_1417 0.23 -0.1
1,731,322 + DvMF_1417 0.25 +0.2
1,731,705 + DvMF_1417 0.38 -0.7
1,731,744 + DvMF_1417 0.39 -1.2
1,732,128 + DvMF_1417 0.52 -1.4
1,732,203 + DvMF_1417 0.55 -0.7
1,732,340 + DvMF_1417 0.59 -1.5
1,732,340 + DvMF_1417 0.59 +1.1
1,732,373 + DvMF_1417 0.61 -1.4
1,732,474 + DvMF_1417 0.64 -1.1
1,732,647 + DvMF_1417 0.70 -0.7
1,732,655 - DvMF_1417 0.70 +0.0
1,732,792 - DvMF_1417 0.75 -2.1
1,732,807 + DvMF_1417 0.75 -0.3
1,732,951 + DvMF_1417 0.80 -1.2
1,732,975 - DvMF_1417 0.81 +0.4
1,733,047 - DvMF_1417 0.84 +0.0
1,733,206 + DvMF_1417 0.89 -0.4
1,733,352 + +0.3
1,733,576 + -1.6
1,733,616 - DvMF_1418 0.12 -0.9
1,733,643 - DvMF_1418 0.21 -1.2
1,733,963 + +0.1
1,734,364 + -1.2
1,734,388 - -1.2
1,734,474 + -1.0
1,734,504 - -0.2
1,734,511 - -1.3

Or see this region's nucleotide sequence