Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1315

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1314 and DvMF_1315 are separated by 283 nucleotidesDvMF_1315 and DvMF_1316 are separated by 752 nucleotides DvMF_1314: DvMF_1314 - putative aminopeptidase 1 (RefSeq), at 1,604,743 to 1,606,194 _1314 DvMF_1315: DvMF_1315 - iron-containing alcohol dehydrogenase (RefSeq), at 1,606,478 to 1,607,659 _1315 DvMF_1316: DvMF_1316 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,608,412 to 1,609,479 _1316 Position (kb) 1606 1607 1608Strain fitness (log2 ratio) -2 -1 0 1at 1605.562 kb on - strand, within DvMF_1314at 1605.758 kb on - strand, within DvMF_1314at 1606.110 kb on + strandat 1606.124 kb on + strandat 1606.134 kb on + strandat 1606.149 kb on + strandat 1606.636 kb on - strand, within DvMF_1315at 1606.641 kb on - strand, within DvMF_1315at 1606.684 kb on + strand, within DvMF_1315at 1606.721 kb on + strand, within DvMF_1315at 1606.729 kb on - strand, within DvMF_1315at 1606.985 kb on - strand, within DvMF_1315at 1607.361 kb on - strand, within DvMF_1315at 1607.433 kb on + strand, within DvMF_1315at 1607.507 kb on + strand, within DvMF_1315at 1607.603 kb on - strandat 1607.612 kb on - strandat 1608.368 kb on - strandat 1608.582 kb on - strand, within DvMF_1316

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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1,605,562 - DvMF_1314 0.56 -1.7
1,605,758 - DvMF_1314 0.70 -1.5
1,606,110 + -0.7
1,606,124 + -2.1
1,606,134 + -0.3
1,606,149 + -1.7
1,606,636 - DvMF_1315 0.13 -1.4
1,606,641 - DvMF_1315 0.14 -0.5
1,606,684 + DvMF_1315 0.17 +0.2
1,606,721 + DvMF_1315 0.21 -0.5
1,606,729 - DvMF_1315 0.21 -0.7
1,606,985 - DvMF_1315 0.43 -0.5
1,607,361 - DvMF_1315 0.75 -0.0
1,607,433 + DvMF_1315 0.81 -0.9
1,607,507 + DvMF_1315 0.87 -0.2
1,607,603 - -1.6
1,607,612 - -0.6
1,608,368 - -0.4
1,608,582 - DvMF_1316 0.16 -2.4

Or see this region's nucleotide sequence