Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1311

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1310 and DvMF_1311 are separated by 45 nucleotidesDvMF_1311 and DvMF_1312 are separated by 82 nucleotides DvMF_1310: DvMF_1310 - FolC bifunctional protein (RefSeq), at 1,599,296 to 1,600,795 _1310 DvMF_1311: DvMF_1311 - selenocysteine synthase (RefSeq), at 1,600,841 to 1,602,361 _1311 DvMF_1312: DvMF_1312 - NAD-dependent epimerase/dehydratase (RefSeq), at 1,602,444 to 1,603,436 _1312 Position (kb) 1600 1601 1602 1603Strain fitness (log2 ratio) -1 0 1at 1600.210 kb on - strand, within DvMF_1310at 1600.867 kb on - strandat 1601.886 kb on + strand, within DvMF_1311at 1602.012 kb on + strand, within DvMF_1311at 1602.127 kb on + strand, within DvMF_1311at 1602.299 kb on - strandat 1602.325 kb on + strandat 1602.372 kb on + strandat 1602.407 kb on + strandat 1602.522 kb on - strandat 1602.657 kb on - strand, within DvMF_1312at 1602.657 kb on - strand, within DvMF_1312at 1602.694 kb on + strand, within DvMF_1312at 1602.746 kb on - strand, within DvMF_1312at 1602.787 kb on - strand, within DvMF_1312at 1602.824 kb on + strand, within DvMF_1312at 1602.912 kb on + strand, within DvMF_1312

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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1,600,210 - DvMF_1310 0.61 -1.2
1,600,867 - +0.4
1,601,886 + DvMF_1311 0.69 +0.2
1,602,012 + DvMF_1311 0.77 +0.8
1,602,127 + DvMF_1311 0.85 +1.3
1,602,299 - -0.9
1,602,325 + +0.8
1,602,372 + -0.2
1,602,407 + -0.8
1,602,522 - -0.5
1,602,657 - DvMF_1312 0.21 -1.0
1,602,657 - DvMF_1312 0.21 -0.5
1,602,694 + DvMF_1312 0.25 -0.8
1,602,746 - DvMF_1312 0.30 -0.9
1,602,787 - DvMF_1312 0.35 -1.5
1,602,824 + DvMF_1312 0.38 -0.3
1,602,912 + DvMF_1312 0.47 -0.7

Or see this region's nucleotide sequence