Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1194

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1193 and DvMF_1194 are separated by 272 nucleotidesDvMF_1194 and DvMF_1195 are separated by 100 nucleotides DvMF_1193: DvMF_1193 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,471,305 to 1,472,309 _1193 DvMF_1194: DvMF_1194 - GrpE protein (RefSeq), at 1,472,582 to 1,473,187 _1194 DvMF_1195: DvMF_1195 - heat-inducible transcription repressor HrcA (RefSeq), at 1,473,288 to 1,474,355 _1195 Position (kb) 1472 1473 1474Strain fitness (log2 ratio) -2 -1 0 1at 1471.766 kb on + strand, within DvMF_1193at 1471.777 kb on + strand, within DvMF_1193at 1471.777 kb on + strand, within DvMF_1193at 1471.790 kb on - strand, within DvMF_1193at 1471.855 kb on + strand, within DvMF_1193at 1471.911 kb on - strand, within DvMF_1193at 1473.157 kb on - strandat 1473.197 kb on - strandat 1473.492 kb on - strand, within DvMF_1195at 1473.531 kb on - strand, within DvMF_1195at 1473.533 kb on + strand, within DvMF_1195at 1474.095 kb on + strand, within DvMF_1195

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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1,471,766 + DvMF_1193 0.46 -0.8
1,471,777 + DvMF_1193 0.47 -0.2
1,471,777 + DvMF_1193 0.47 -1.2
1,471,790 - DvMF_1193 0.48 -0.6
1,471,855 + DvMF_1193 0.55 -1.5
1,471,911 - DvMF_1193 0.60 -0.7
1,473,157 - -1.3
1,473,197 - +0.3
1,473,492 - DvMF_1195 0.19 -1.2
1,473,531 - DvMF_1195 0.23 -2.2
1,473,533 + DvMF_1195 0.23 -1.7
1,474,095 + DvMF_1195 0.76 -0.4

Or see this region's nucleotide sequence