Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0942

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0941 and DvMF_0942 overlap by 4 nucleotidesDvMF_0942 and DvMF_0943 are separated by 331 nucleotidesDvMF_0943 and DvMF_0944 are separated by 408 nucleotides DvMF_0941: DvMF_0941 - ABC transporter related (RefSeq), at 1,141,160 to 1,142,848 _0941 DvMF_0942: DvMF_0942 - N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (RefSeq), at 1,142,845 to 1,143,618 _0942 DvMF_0943: DvMF_0943 - hypothetical protein (RefSeq), at 1,143,950 to 1,144,045 _0943 DvMF_0944: DvMF_0944 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,144,454 to 1,145,299 _0944 Position (kb) 1142 1143 1144Strain fitness (log2 ratio) -2 -1 0 1at 1141.853 kb on - strand, within DvMF_0941at 1142.099 kb on + strand, within DvMF_0941at 1142.107 kb on - strand, within DvMF_0941at 1142.112 kb on - strand, within DvMF_0941at 1142.409 kb on + strand, within DvMF_0941at 1142.409 kb on + strand, within DvMF_0941at 1142.505 kb on + strand, within DvMF_0941at 1142.646 kb on - strand, within DvMF_0941at 1142.955 kb on - strand, within DvMF_0942at 1143.436 kb on - strand, within DvMF_0942at 1143.506 kb on + strand, within DvMF_0942at 1143.601 kb on + strandat 1143.757 kb on - strandat 1143.782 kb on + strandat 1143.782 kb on + strandat 1143.790 kb on - strandat 1143.790 kb on - strandat 1143.790 kb on - strandat 1143.790 kb on - strandat 1143.828 kb on + strandat 1144.527 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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1,141,853 - DvMF_0941 0.41 -0.2
1,142,099 + DvMF_0941 0.56 -2.3
1,142,107 - DvMF_0941 0.56 -0.4
1,142,112 - DvMF_0941 0.56 -1.1
1,142,409 + DvMF_0941 0.74 -0.7
1,142,409 + DvMF_0941 0.74 -0.3
1,142,505 + DvMF_0941 0.80 -0.3
1,142,646 - DvMF_0941 0.88 +1.3
1,142,955 - DvMF_0942 0.14 -0.4
1,143,436 - DvMF_0942 0.76 -0.2
1,143,506 + DvMF_0942 0.85 -0.3
1,143,601 + -0.9
1,143,757 - -0.6
1,143,782 + -0.5
1,143,782 + -0.2
1,143,790 - -1.1
1,143,790 - -2.3
1,143,790 - -1.5
1,143,790 - -0.8
1,143,828 + -0.1
1,144,527 - -0.2

Or see this region's nucleotide sequence