Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0916

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0915 and DvMF_0916 are separated by 89 nucleotidesDvMF_0916 and DvMF_0917 are separated by 263 nucleotides DvMF_0915: DvMF_0915 - SufBD protein (RefSeq), at 1,100,546 to 1,101,712 _0915 DvMF_0916: DvMF_0916 - YCII-related (RefSeq), at 1,101,802 to 1,102,089 _0916 DvMF_0917: DvMF_0917 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 1,102,353 to 1,104,161 _0917 Position (kb) 1101 1102 1103Strain fitness (log2 ratio) -2 -1 0 1at 1101.744 kb on + strandat 1101.780 kb on - strandat 1101.979 kb on - strand, within DvMF_0916at 1102.030 kb on - strand, within DvMF_0916at 1102.082 kb on - strandat 1102.265 kb on + strandat 1102.481 kb on + strandat 1102.510 kb on - strandat 1102.550 kb on - strand, within DvMF_0917at 1102.649 kb on + strand, within DvMF_0917at 1102.906 kb on - strand, within DvMF_0917at 1103.055 kb on - strand, within DvMF_0917

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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1,101,744 + -0.9
1,101,780 - -0.1
1,101,979 - DvMF_0916 0.61 -1.3
1,102,030 - DvMF_0916 0.79 -1.0
1,102,082 - -1.3
1,102,265 + +0.3
1,102,481 + -0.9
1,102,510 - +1.1
1,102,550 - DvMF_0917 0.11 -0.1
1,102,649 + DvMF_0917 0.16 -1.9
1,102,906 - DvMF_0917 0.31 -1.5
1,103,055 - DvMF_0917 0.39 +0.2

Or see this region's nucleotide sequence