Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0894

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0893 and DvMF_0894 are separated by 221 nucleotidesDvMF_0894 and DvMF_0895 are separated by 191 nucleotides DvMF_0893: DvMF_0893 - hypothetical protein (RefSeq), at 1,076,836 to 1,077,468 _0893 DvMF_0894: DvMF_0894 - Hpt protein (RefSeq), at 1,077,690 to 1,078,352 _0894 DvMF_0895: DvMF_0895 - hypothetical protein (RefSeq), at 1,078,544 to 1,079,413 _0895 Position (kb) 1077 1078 1079Strain fitness (log2 ratio) -2 -1 0 1at 1076.706 kb on - strandat 1076.706 kb on - strandat 1076.934 kb on + strand, within DvMF_0893at 1076.934 kb on + strand, within DvMF_0893at 1076.960 kb on + strand, within DvMF_0893at 1076.982 kb on - strand, within DvMF_0893at 1076.992 kb on - strand, within DvMF_0893at 1077.168 kb on + strand, within DvMF_0893at 1077.247 kb on - strand, within DvMF_0893at 1077.487 kb on + strandat 1077.601 kb on + strandat 1077.725 kb on - strandat 1077.981 kb on - strand, within DvMF_0894at 1077.981 kb on - strand, within DvMF_0894at 1078.236 kb on - strand, within DvMF_0894at 1078.608 kb on + strandat 1078.692 kb on - strand, within DvMF_0895at 1078.743 kb on - strand, within DvMF_0895at 1078.790 kb on - strand, within DvMF_0895at 1078.828 kb on - strand, within DvMF_0895at 1078.976 kb on - strand, within DvMF_0895at 1079.027 kb on - strand, within DvMF_0895at 1079.075 kb on + strand, within DvMF_0895

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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1,076,706 - -0.6
1,076,706 - -0.1
1,076,934 + DvMF_0893 0.15 -0.5
1,076,934 + DvMF_0893 0.15 +0.1
1,076,960 + DvMF_0893 0.20 +0.3
1,076,982 - DvMF_0893 0.23 -0.3
1,076,992 - DvMF_0893 0.25 -0.6
1,077,168 + DvMF_0893 0.52 -1.0
1,077,247 - DvMF_0893 0.65 -0.9
1,077,487 + -1.6
1,077,601 + -0.7
1,077,725 - -1.1
1,077,981 - DvMF_0894 0.44 -1.2
1,077,981 - DvMF_0894 0.44 -0.0
1,078,236 - DvMF_0894 0.82 -0.3
1,078,608 + -0.5
1,078,692 - DvMF_0895 0.17 -0.4
1,078,743 - DvMF_0895 0.23 +0.5
1,078,790 - DvMF_0895 0.28 -1.8
1,078,828 - DvMF_0895 0.33 +0.2
1,078,976 - DvMF_0895 0.50 -0.8
1,079,027 - DvMF_0895 0.56 -1.2
1,079,075 + DvMF_0895 0.61 +0.9

Or see this region's nucleotide sequence