Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0888 and DvMF_0889 overlap by 11 nucleotides DvMF_0889 and DvMF_0890 overlap by 4 nucleotides DvMF_0890 and DvMF_0891 overlap by 13 nucleotides DvMF_0891 and DvMF_0892 are separated by 540 nucleotides
DvMF_0888: DvMF_0888 - 60 kDa inner membrane insertion protein (RefSeq), at 1,072,500 to 1,074,119
_0888
DvMF_0889: DvMF_0889 - protein of unknown function DUF37 (RefSeq), at 1,074,109 to 1,074,426
_0889
DvMF_0890: DvMF_0890 - ribonuclease P protein component (RefSeq), at 1,074,423 to 1,074,965
_0890
DvMF_0891: DvMF_0891 - ribosomal protein L34 (RefSeq), at 1,074,953 to 1,075,090
_0891
DvMF_0892: DvMF_0892 - hypothetical protein (RefSeq), at 1,075,631 to 1,076,659
_0892
Position (kb) 1074
1075
1076 Strain fitness (log2 ratio) -1
0
1 at 1075.453 kb on + strand at 1075.643 kb on + strand at 1075.920 kb on + strand, within DvMF_0892 at 1075.923 kb on - strand, within DvMF_0892 at 1075.923 kb on - strand, within DvMF_0892 at 1075.928 kb on - strand, within DvMF_0892 at 1075.953 kb on - strand, within DvMF_0892
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 1,075,453 + +0.5 1,075,643 + -0.7 1,075,920 + DvMF_0892 0.28 -1.6 1,075,923 - DvMF_0892 0.28 -0.4 1,075,923 - DvMF_0892 0.28 -0.4 1,075,928 - DvMF_0892 0.29 -1.0 1,075,953 - DvMF_0892 0.31 +0.8
Or see this region's nucleotide sequence