Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0819 and DvMF_0820 overlap by 11 nucleotides DvMF_0820 and DvMF_0821 are separated by 138 nucleotides DvMF_0821 and DvMF_0822 are separated by 922 nucleotides
DvMF_0819: DvMF_0819 - OmpA/MotB domain protein (RefSeq), at 987,821 to 988,555
_0819
DvMF_0820: DvMF_0820 - MotA/TolQ/ExbB proton channel (RefSeq), at 988,545 to 989,300
_0820
DvMF_0821: DvMF_0821 - purine nucleoside phosphorylase (RefSeq), at 989,439 to 990,284
_0821
DvMF_0822: DvMF_0822 - GTP-binding protein TypA (RefSeq), at 991,207 to 993,045
_0822
Position (kb) 989
990
991 Strain fitness (log2 ratio) -1
0
1 at 988.720 kb on + strand, within DvMF_0820 at 989.240 kb on + strand at 989.243 kb on - strand at 989.546 kb on - strand, within DvMF_0821 at 989.680 kb on + strand, within DvMF_0821 at 989.891 kb on - strand, within DvMF_0821 at 990.154 kb on + strand, within DvMF_0821 at 990.187 kb on + strand, within DvMF_0821 at 990.279 kb on + strand at 990.279 kb on + strand at 990.291 kb on + strand at 990.299 kb on - strand at 990.321 kb on - strand at 990.582 kb on + strand at 990.592 kb on + strand at 990.609 kb on + strand at 990.826 kb on + strand at 990.874 kb on - strand at 991.159 kb on + strand at 991.232 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 988,720 + DvMF_0820 0.23 -0.3 989,240 + +1.3 989,243 - -1.1 989,546 - DvMF_0821 0.13 -0.8 989,680 + DvMF_0821 0.28 +1.6 989,891 - DvMF_0821 0.53 -0.7 990,154 + DvMF_0821 0.85 -0.3 990,187 + DvMF_0821 0.88 -0.5 990,279 + +0.1 990,279 + -0.4 990,291 + -1.4 990,299 - +0.2 990,321 - -0.5 990,582 + -0.8 990,592 + -1.4 990,609 + -1.1 990,826 + +0.7 990,874 - +1.4 991,159 + -1.5 991,232 + -0.2
Or see this region's nucleotide sequence