Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0799

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0798 and thiH are separated by 84 nucleotidesthiH and thiG are separated by 119 nucleotidesthiG and DvMF_0801 overlap by 1 nucleotides DvMF_0798: DvMF_0798 - thiamine biosynthesis protein ThiF (RefSeq), at 962,598 to 963,218 _0798 DvMF_0799: thiH - thiamine biosynthesis protein ThiH (RefSeq), at 963,303 to 964,547 thiH DvMF_0800: thiG - thiazole synthase (RefSeq), at 964,667 to 965,467 thiG DvMF_0801: DvMF_0801 - thiamine biosynthesis protein ThiS (RefSeq), at 965,467 to 965,667 _0801 Position (kb) 963 964 965Strain fitness (log2 ratio) -2 -1 0 1at 962.417 kb on - strandat 962.504 kb on + strandat 962.583 kb on - strandat 962.859 kb on + strand, within DvMF_0798at 963.068 kb on + strand, within DvMF_0798at 963.186 kb on - strandat 963.734 kb on + strand, within thiHat 963.885 kb on + strand, within thiHat 963.893 kb on - strand, within thiHat 963.967 kb on + strand, within thiHat 963.980 kb on + strand, within thiHat 964.032 kb on - strand, within thiHat 964.065 kb on - strand, within thiHat 964.590 kb on - strandat 964.801 kb on - strand, within thiGat 964.877 kb on - strand, within thiGat 965.230 kb on + strand, within thiGat 965.238 kb on + strand, within thiGat 965.297 kb on + strand, within thiGat 965.317 kb on + strand, within thiGat 965.348 kb on - strand, within thiGat 965.356 kb on + strand, within thiGat 965.356 kb on + strand, within thiGat 965.493 kb on - strand, within DvMF_0801at 965.525 kb on + strand, within DvMF_0801at 965.542 kb on - strand, within DvMF_0801

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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962,417 - -1.0
962,504 + -0.5
962,583 - -1.3
962,859 + DvMF_0798 0.42 -0.8
963,068 + DvMF_0798 0.76 -1.3
963,186 - -1.5
963,734 + thiH DvMF_0799 0.35 -0.2
963,885 + thiH DvMF_0799 0.47 +0.2
963,893 - thiH DvMF_0799 0.47 -1.0
963,967 + thiH DvMF_0799 0.53 -1.5
963,980 + thiH DvMF_0799 0.54 -1.9
964,032 - thiH DvMF_0799 0.59 -1.2
964,065 - thiH DvMF_0799 0.61 -0.7
964,590 - -0.7
964,801 - thiG DvMF_0800 0.17 -1.6
964,877 - thiG DvMF_0800 0.26 +0.4
965,230 + thiG DvMF_0800 0.70 -1.4
965,238 + thiG DvMF_0800 0.71 -0.5
965,297 + thiG DvMF_0800 0.79 -1.0
965,317 + thiG DvMF_0800 0.81 -0.5
965,348 - thiG DvMF_0800 0.85 -1.0
965,356 + thiG DvMF_0800 0.86 -1.9
965,356 + thiG DvMF_0800 0.86 -0.4
965,493 - DvMF_0801 0.13 -1.8
965,525 + DvMF_0801 0.29 -0.9
965,542 - DvMF_0801 0.37 -0.7

Or see this region's nucleotide sequence