Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0697

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0696 and DvMF_0697 overlap by 4 nucleotidesDvMF_0697 and DvMF_0698 overlap by 1 nucleotides DvMF_0696: DvMF_0696 - secretion protein HlyD family protein (RefSeq), at 843,362 to 844,423 _0696 DvMF_0697: DvMF_0697 - ABC transporter related (RefSeq), at 844,420 to 845,118 _0697 DvMF_0698: DvMF_0698 - protein of unknown function DUF214 (RefSeq), at 845,118 to 846,248 _0698 Position (kb) 844 845 846Strain fitness (log2 ratio) -2 -1 0 1at 843.486 kb on - strand, within DvMF_0696at 843.749 kb on + strand, within DvMF_0696at 843.767 kb on - strand, within DvMF_0696at 843.769 kb on + strand, within DvMF_0696at 843.769 kb on + strand, within DvMF_0696at 843.919 kb on + strand, within DvMF_0696at 843.945 kb on - strand, within DvMF_0696at 844.237 kb on - strand, within DvMF_0696at 844.248 kb on - strand, within DvMF_0696at 844.254 kb on + strand, within DvMF_0696at 844.262 kb on - strand, within DvMF_0696at 844.327 kb on + strandat 844.660 kb on - strand, within DvMF_0697at 845.463 kb on + strand, within DvMF_0698at 845.631 kb on - strand, within DvMF_0698at 845.844 kb on + strand, within DvMF_0698at 845.983 kb on - strand, within DvMF_0698at 845.995 kb on + strand, within DvMF_0698

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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843,486 - DvMF_0696 0.12 -0.2
843,749 + DvMF_0696 0.36 +0.3
843,767 - DvMF_0696 0.38 -0.8
843,769 + DvMF_0696 0.38 -1.4
843,769 + DvMF_0696 0.38 -0.3
843,919 + DvMF_0696 0.52 -0.6
843,945 - DvMF_0696 0.55 -0.8
844,237 - DvMF_0696 0.82 -1.5
844,248 - DvMF_0696 0.83 +0.7
844,254 + DvMF_0696 0.84 -0.6
844,262 - DvMF_0696 0.85 -1.5
844,327 + -0.2
844,660 - DvMF_0697 0.34 +0.4
845,463 + DvMF_0698 0.31 -0.9
845,631 - DvMF_0698 0.45 -2.2
845,844 + DvMF_0698 0.64 +0.6
845,983 - DvMF_0698 0.76 +0.5
845,995 + DvMF_0698 0.78 +0.6

Or see this region's nucleotide sequence