Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0635 and DvMF_0636 overlap by 4 nucleotides DvMF_0636 and DvMF_0637 overlap by 4 nucleotides
DvMF_0635: DvMF_0635 - protein of unknown function DUF182 (RefSeq), at 758,152 to 759,240
_0635
DvMF_0636: DvMF_0636 - coenzyme F390 synthetase-like protein (RefSeq), at 759,237 to 760,457
_0636
DvMF_0637: DvMF_0637 - Radical SAM domain protein (RefSeq), at 760,454 to 762,220
_0637
Position (kb) 759
760
761 Strain fitness (log2 ratio) -2
-1
0
1 at 758.237 kb on - strand at 758.393 kb on + strand, within DvMF_0635 at 758.403 kb on + strand, within DvMF_0635 at 758.442 kb on + strand, within DvMF_0635 at 758.450 kb on - strand, within DvMF_0635 at 759.003 kb on + strand, within DvMF_0635 at 759.030 kb on - strand, within DvMF_0635 at 759.092 kb on - strand, within DvMF_0635 at 759.260 kb on + strand at 759.260 kb on + strand at 759.308 kb on - strand at 759.490 kb on - strand, within DvMF_0636 at 759.506 kb on + strand, within DvMF_0636 at 759.581 kb on + strand, within DvMF_0636 at 759.588 kb on + strand, within DvMF_0636 at 759.588 kb on + strand, within DvMF_0636 at 759.588 kb on + strand, within DvMF_0636 at 759.588 kb on + strand, within DvMF_0636 at 759.596 kb on - strand, within DvMF_0636 at 759.596 kb on - strand, within DvMF_0636 at 759.596 kb on - strand, within DvMF_0636 at 759.596 kb on - strand, within DvMF_0636 at 759.665 kb on + strand, within DvMF_0636 at 759.704 kb on - strand, within DvMF_0636 at 759.920 kb on + strand, within DvMF_0636 at 759.920 kb on + strand, within DvMF_0636 at 760.200 kb on - strand, within DvMF_0636 at 760.336 kb on + strand at 760.529 kb on + strand at 760.537 kb on - strand at 760.537 kb on - strand at 760.579 kb on - strand at 760.725 kb on + strand, within DvMF_0637 at 760.762 kb on - strand, within DvMF_0637 at 760.779 kb on - strand, within DvMF_0637 at 761.133 kb on + strand, within DvMF_0637 at 761.141 kb on - strand, within DvMF_0637 at 761.155 kb on - strand, within DvMF_0637 at 761.157 kb on + strand, within DvMF_0637 at 761.209 kb on + strand, within DvMF_0637 at 761.214 kb on - strand, within DvMF_0637
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 758,237 - +1.4 758,393 + DvMF_0635 0.22 -0.5 758,403 + DvMF_0635 0.23 -1.0 758,442 + DvMF_0635 0.27 -1.6 758,450 - DvMF_0635 0.27 -0.0 759,003 + DvMF_0635 0.78 -1.5 759,030 - DvMF_0635 0.81 +0.2 759,092 - DvMF_0635 0.86 +0.3 759,260 + -1.6 759,260 + -1.1 759,308 - -1.0 759,490 - DvMF_0636 0.21 +0.0 759,506 + DvMF_0636 0.22 +0.5 759,581 + DvMF_0636 0.28 -1.0 759,588 + DvMF_0636 0.29 -1.2 759,588 + DvMF_0636 0.29 -0.8 759,588 + DvMF_0636 0.29 -1.0 759,588 + DvMF_0636 0.29 -1.1 759,596 - DvMF_0636 0.29 -1.2 759,596 - DvMF_0636 0.29 -1.6 759,596 - DvMF_0636 0.29 -1.0 759,596 - DvMF_0636 0.29 -0.2 759,665 + DvMF_0636 0.35 +1.1 759,704 - DvMF_0636 0.38 +0.6 759,920 + DvMF_0636 0.56 -1.2 759,920 + DvMF_0636 0.56 -1.7 760,200 - DvMF_0636 0.79 -0.4 760,336 + -2.0 760,529 + -0.0 760,537 - -0.9 760,537 - -0.8 760,579 - -0.2 760,725 + DvMF_0637 0.15 -1.3 760,762 - DvMF_0637 0.17 -0.1 760,779 - DvMF_0637 0.18 -0.9 761,133 + DvMF_0637 0.38 -0.9 761,141 - DvMF_0637 0.39 -0.8 761,155 - DvMF_0637 0.40 -0.8 761,157 + DvMF_0637 0.40 -0.8 761,209 + DvMF_0637 0.43 -0.7 761,214 - DvMF_0637 0.43 -1.0
Or see this region's nucleotide sequence