Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0631 and DvMF_0632 are separated by 446 nucleotides DvMF_0632 and DvMF_0633 are separated by 146 nucleotides DvMF_0633 and DvMF_0634 overlap by 4 nucleotides
DvMF_0631: DvMF_0631 - efflux transporter, RND family, MFP subunit (RefSeq), at 753,352 to 754,650
_0631
DvMF_0632: DvMF_0632 - hypothetical protein (RefSeq), at 755,097 to 755,330
_0632
DvMF_0633: DvMF_0633 - Phosphoglycerate mutase (RefSeq), at 755,477 to 756,460
_0633
DvMF_0634: DvMF_0634 - metal dependent phosphohydrolase (RefSeq), at 756,457 to 758,001
_0634
Position (kb) 755
756
757 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 754.563 kb on - strand at 754.737 kb on + strand at 755.021 kb on + strand at 755.088 kb on + strand at 755.089 kb on - strand at 755.350 kb on + strand at 755.391 kb on - strand at 755.596 kb on + strand, within DvMF_0633 at 755.625 kb on - strand, within DvMF_0633 at 755.777 kb on - strand, within DvMF_0633 at 755.947 kb on + strand, within DvMF_0633 at 756.144 kb on - strand, within DvMF_0633 at 756.144 kb on - strand, within DvMF_0633 at 756.338 kb on - strand, within DvMF_0633 at 756.456 kb on + strand at 756.591 kb on + strand at 756.701 kb on + strand, within DvMF_0634 at 756.705 kb on + strand, within DvMF_0634 at 757.122 kb on - strand, within DvMF_0634 at 757.422 kb on - strand, within DvMF_0634
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 754,563 - -0.4 754,737 + -0.3 755,021 + -1.9 755,088 + -0.9 755,089 - -1.6 755,350 + -1.5 755,391 - -0.7 755,596 + DvMF_0633 0.12 -1.1 755,625 - DvMF_0633 0.15 -1.6 755,777 - DvMF_0633 0.30 +0.0 755,947 + DvMF_0633 0.48 -0.6 756,144 - DvMF_0633 0.68 -1.6 756,144 - DvMF_0633 0.68 -1.8 756,338 - DvMF_0633 0.88 -1.8 756,456 + -0.9 756,591 + +3.0 756,701 + DvMF_0634 0.16 -1.4 756,705 + DvMF_0634 0.16 -1.6 757,122 - DvMF_0634 0.43 -1.0 757,422 - DvMF_0634 0.62 -0.8
Or see this region's nucleotide sequence