Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0632

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0631 and DvMF_0632 are separated by 446 nucleotidesDvMF_0632 and DvMF_0633 are separated by 146 nucleotides DvMF_0631: DvMF_0631 - efflux transporter, RND family, MFP subunit (RefSeq), at 753,352 to 754,650 _0631 DvMF_0632: DvMF_0632 - hypothetical protein (RefSeq), at 755,097 to 755,330 _0632 DvMF_0633: DvMF_0633 - Phosphoglycerate mutase (RefSeq), at 755,477 to 756,460 _0633 Position (kb) 755 756Strain fitness (log2 ratio) -2 -1 0 1at 754.210 kb on + strand, within DvMF_0631at 754.276 kb on + strand, within DvMF_0631at 754.389 kb on + strand, within DvMF_0631at 754.430 kb on + strand, within DvMF_0631at 754.563 kb on - strandat 754.737 kb on + strandat 755.021 kb on + strandat 755.088 kb on + strandat 755.089 kb on - strandat 755.350 kb on + strandat 755.391 kb on - strandat 755.596 kb on + strand, within DvMF_0633at 755.625 kb on - strand, within DvMF_0633at 755.777 kb on - strand, within DvMF_0633at 755.947 kb on + strand, within DvMF_0633at 756.144 kb on - strand, within DvMF_0633at 756.144 kb on - strand, within DvMF_0633

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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754,210 + DvMF_0631 0.66 -0.5
754,276 + DvMF_0631 0.71 -0.2
754,389 + DvMF_0631 0.80 -0.0
754,430 + DvMF_0631 0.83 -1.1
754,563 - -0.4
754,737 + -0.3
755,021 + -1.9
755,088 + -0.9
755,089 - -1.6
755,350 + -1.5
755,391 - -0.7
755,596 + DvMF_0633 0.12 -1.1
755,625 - DvMF_0633 0.15 -1.6
755,777 - DvMF_0633 0.30 +0.0
755,947 + DvMF_0633 0.48 -0.6
756,144 - DvMF_0633 0.68 -1.6
756,144 - DvMF_0633 0.68 -1.8

Or see this region's nucleotide sequence