Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0630

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0629 and DvMF_0630 overlap by 14 nucleotidesDvMF_0630 and DvMF_0631 overlap by 4 nucleotides DvMF_0629: DvMF_0629 - protein of unknown function DUF214 (RefSeq), at 751,411 to 752,562 _0629 DvMF_0630: DvMF_0630 - ABC transporter related (RefSeq), at 752,549 to 753,355 _0630 DvMF_0631: DvMF_0631 - efflux transporter, RND family, MFP subunit (RefSeq), at 753,352 to 754,650 _0631 Position (kb) 752 753 754Strain fitness (log2 ratio) -1 0 1at 751.622 kb on + strand, within DvMF_0629at 751.892 kb on - strand, within DvMF_0629at 751.953 kb on - strand, within DvMF_0629at 752.098 kb on - strand, within DvMF_0629at 752.234 kb on - strand, within DvMF_0629at 752.491 kb on + strandat 752.628 kb on - strandat 752.808 kb on + strand, within DvMF_0630at 752.816 kb on - strand, within DvMF_0630at 752.851 kb on - strand, within DvMF_0630at 752.933 kb on - strand, within DvMF_0630at 753.005 kb on + strand, within DvMF_0630at 753.074 kb on - strand, within DvMF_0630at 753.188 kb on + strand, within DvMF_0630at 753.486 kb on + strand, within DvMF_0631at 753.654 kb on + strand, within DvMF_0631at 753.894 kb on + strand, within DvMF_0631at 754.075 kb on + strand, within DvMF_0631at 754.210 kb on + strand, within DvMF_0631at 754.276 kb on + strand, within DvMF_0631

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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751,622 + DvMF_0629 0.18 -0.9
751,892 - DvMF_0629 0.42 +0.7
751,953 - DvMF_0629 0.47 -0.4
752,098 - DvMF_0629 0.60 -0.5
752,234 - DvMF_0629 0.71 -0.6
752,491 + -1.4
752,628 - -0.7
752,808 + DvMF_0630 0.32 -0.6
752,816 - DvMF_0630 0.33 -0.0
752,851 - DvMF_0630 0.37 -0.5
752,933 - DvMF_0630 0.48 +1.0
753,005 + DvMF_0630 0.57 -0.0
753,074 - DvMF_0630 0.65 -1.1
753,188 + DvMF_0630 0.79 -0.2
753,486 + DvMF_0631 0.10 -0.9
753,654 + DvMF_0631 0.23 +0.5
753,894 + DvMF_0631 0.42 -1.4
754,075 + DvMF_0631 0.56 -1.3
754,210 + DvMF_0631 0.66 -0.5
754,276 + DvMF_0631 0.71 -0.2

Or see this region's nucleotide sequence