Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0519 and DvMF_0520 are separated by 69 nucleotides DvMF_0520 and DvMF_0521 are separated by 3 nucleotides
DvMF_0519: DvMF_0519 - ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein (RefSeq), at 612,678 to 613,742
_0519
DvMF_0520: DvMF_0520 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 613,812 to 614,609
_0520
DvMF_0521: DvMF_0521 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 614,613 to 615,491
_0521
Position (kb) 613
614
615 Strain fitness (log2 ratio) -2
-1
0
1 at 612.831 kb on + strand, within DvMF_0519 at 612.901 kb on - strand, within DvMF_0519 at 612.915 kb on - strand, within DvMF_0519 at 613.047 kb on - strand, within DvMF_0519 at 613.061 kb on + strand, within DvMF_0519 at 613.137 kb on - strand, within DvMF_0519 at 613.234 kb on - strand, within DvMF_0519 at 613.440 kb on - strand, within DvMF_0519 at 613.529 kb on + strand, within DvMF_0519 at 613.608 kb on + strand, within DvMF_0519 at 613.615 kb on - strand, within DvMF_0519 at 613.616 kb on - strand, within DvMF_0519 at 613.658 kb on + strand at 613.732 kb on - strand at 613.924 kb on - strand, within DvMF_0520 at 614.460 kb on + strand, within DvMF_0520 at 614.525 kb on + strand, within DvMF_0520 at 614.673 kb on - strand at 614.704 kb on + strand, within DvMF_0521 at 614.720 kb on + strand, within DvMF_0521 at 614.811 kb on + strand, within DvMF_0521 at 614.966 kb on + strand, within DvMF_0521 at 615.085 kb on + strand, within DvMF_0521 at 615.293 kb on - strand, within DvMF_0521 at 615.336 kb on + strand, within DvMF_0521 at 615.355 kb on + strand, within DvMF_0521
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 612,831 + DvMF_0519 0.14 -1.4 612,901 - DvMF_0519 0.21 +1.3 612,915 - DvMF_0519 0.22 -1.1 613,047 - DvMF_0519 0.35 -0.2 613,061 + DvMF_0519 0.36 -1.3 613,137 - DvMF_0519 0.43 -0.8 613,234 - DvMF_0519 0.52 -0.4 613,440 - DvMF_0519 0.72 -1.3 613,529 + DvMF_0519 0.80 -1.3 613,608 + DvMF_0519 0.87 -0.8 613,615 - DvMF_0519 0.88 -1.7 613,616 - DvMF_0519 0.88 -0.4 613,658 + -0.2 613,732 - +0.0 613,924 - DvMF_0520 0.14 -0.6 614,460 + DvMF_0520 0.81 -0.6 614,525 + DvMF_0520 0.89 -0.9 614,673 - -2.0 614,704 + DvMF_0521 0.10 -1.4 614,720 + DvMF_0521 0.12 -0.8 614,811 + DvMF_0521 0.23 -0.3 614,966 + DvMF_0521 0.40 -0.5 615,085 + DvMF_0521 0.54 -0.6 615,293 - DvMF_0521 0.77 -0.4 615,336 + DvMF_0521 0.82 -1.3 615,355 + DvMF_0521 0.84 -0.1
Or see this region's nucleotide sequence