Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0517 and DvMF_0518 are separated by 190 nucleotides DvMF_0518 and DvMF_0519 are separated by 76 nucleotides
DvMF_0517: DvMF_0517 - alanine dehydrogenase (RefSeq), at 610,546 to 611,655
_0517
DvMF_0518: DvMF_0518 - ABC transporter related (RefSeq), at 611,846 to 612,601
_0518
DvMF_0519: DvMF_0519 - ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein (RefSeq), at 612,678 to 613,742
_0519
Position (kb)
611
612
613 Strain fitness (log2 ratio)
-2
-1
0
1 at 611.311 kb on - strand, within DvMF_0517 at 611.463 kb on + strand, within DvMF_0517 at 611.489 kb on - strand, within DvMF_0517 at 611.503 kb on + strand, within DvMF_0517 at 611.504 kb on - strand, within DvMF_0517 at 611.566 kb on + strand at 611.647 kb on + strand at 611.687 kb on - strand at 611.788 kb on + strand at 611.934 kb on + strand, within DvMF_0518 at 611.944 kb on + strand, within DvMF_0518 at 612.021 kb on - strand, within DvMF_0518 at 612.069 kb on + strand, within DvMF_0518 at 612.234 kb on + strand, within DvMF_0518 at 612.449 kb on + strand, within DvMF_0518 at 612.476 kb on - strand, within DvMF_0518 at 612.831 kb on + strand, within DvMF_0519 at 612.901 kb on - strand, within DvMF_0519 at 612.915 kb on - strand, within DvMF_0519 at 613.047 kb on - strand, within DvMF_0519 at 613.061 kb on + strand, within DvMF_0519 at 613.137 kb on - strand, within DvMF_0519 at 613.234 kb on - strand, within DvMF_0519 at 613.440 kb on - strand, within DvMF_0519 at 613.529 kb on + strand, within DvMF_0519
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 611,311 - DvMF_0517 0.69 -0.8 611,463 + DvMF_0517 0.83 +0.8 611,489 - DvMF_0517 0.85 -1.8 611,503 + DvMF_0517 0.86 +0.2 611,504 - DvMF_0517 0.86 -0.5 611,566 + -1.0 611,647 + +0.1 611,687 - +0.6 611,788 + -1.1 611,934 + DvMF_0518 0.12 -0.3 611,944 + DvMF_0518 0.13 -0.4 612,021 - DvMF_0518 0.23 -0.2 612,069 + DvMF_0518 0.29 -1.0 612,234 + DvMF_0518 0.51 -2.0 612,449 + DvMF_0518 0.80 -1.2 612,476 - DvMF_0518 0.83 -1.3 612,831 + DvMF_0519 0.14 -1.4 612,901 - DvMF_0519 0.21 +1.3 612,915 - DvMF_0519 0.22 -1.1 613,047 - DvMF_0519 0.35 -0.2 613,061 + DvMF_0519 0.36 -1.3 613,137 - DvMF_0519 0.43 -0.8 613,234 - DvMF_0519 0.52 -0.4 613,440 - DvMF_0519 0.72 -1.3 613,529 + DvMF_0519 0.80 -1.3
Or see this region's nucleotide sequence