Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0509 and DvMF_0510 are separated by 162 nucleotides DvMF_0510 and DvMF_0511 are separated by 146 nucleotides
DvMF_0509: DvMF_0509 - diguanylate cyclase (RefSeq), at 599,259 to 600,755
_0509
DvMF_0510: DvMF_0510 - C_GCAxxG_C_C family protein (RefSeq), at 600,918 to 601,412
_0510
DvMF_0511: DvMF_0511 - transcriptional regulator, LysR family (RefSeq), at 601,559 to 603,658
_0511
Position (kb) 600
601
602 Strain fitness (log2 ratio) -2
-1
0
1
2 at 600.246 kb on + strand, within DvMF_0509 at 600.357 kb on - strand, within DvMF_0509 at 600.359 kb on + strand, within DvMF_0509 at 600.367 kb on - strand, within DvMF_0509 at 600.594 kb on + strand, within DvMF_0509 at 600.641 kb on - strand at 600.848 kb on + strand at 600.866 kb on - strand at 600.893 kb on + strand at 600.911 kb on + strand at 600.924 kb on - strand at 601.227 kb on + strand, within DvMF_0510 at 601.267 kb on - strand, within DvMF_0510 at 601.574 kb on + strand at 601.582 kb on - strand at 601.794 kb on + strand, within DvMF_0511 at 602.034 kb on + strand, within DvMF_0511 at 602.121 kb on + strand, within DvMF_0511 at 602.135 kb on - strand, within DvMF_0511 at 602.135 kb on - strand, within DvMF_0511 at 602.139 kb on - strand, within DvMF_0511 at 602.146 kb on + strand, within DvMF_0511 at 602.154 kb on - strand, within DvMF_0511 at 602.180 kb on - strand, within DvMF_0511 at 602.329 kb on + strand, within DvMF_0511 at 602.329 kb on + strand, within DvMF_0511
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 600,246 + DvMF_0509 0.66 -1.0 600,357 - DvMF_0509 0.73 -0.5 600,359 + DvMF_0509 0.73 -0.6 600,367 - DvMF_0509 0.74 -2.0 600,594 + DvMF_0509 0.89 -0.9 600,641 - +1.1 600,848 + -0.9 600,866 - -0.6 600,893 + +2.0 600,911 + +0.2 600,924 - -0.9 601,227 + DvMF_0510 0.62 -0.8 601,267 - DvMF_0510 0.71 +1.4 601,574 + +0.3 601,582 - -0.7 601,794 + DvMF_0511 0.11 -0.1 602,034 + DvMF_0511 0.23 -0.1 602,121 + DvMF_0511 0.27 -1.2 602,135 - DvMF_0511 0.27 -0.7 602,135 - DvMF_0511 0.27 -0.6 602,139 - DvMF_0511 0.28 -1.2 602,146 + DvMF_0511 0.28 +0.3 602,154 - DvMF_0511 0.28 -1.1 602,180 - DvMF_0511 0.30 -1.8 602,329 + DvMF_0511 0.37 -0.1 602,329 + DvMF_0511 0.37 -1.3
Or see this region's nucleotide sequence