Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0495 and DvMF_0496 are separated by 94 nucleotides DvMF_0496 and DvMF_0497 are separated by 8 nucleotides DvMF_0497 and rpsU are separated by 131 nucleotides rpsU and DvMF_0499 are separated by 195 nucleotides
DvMF_0495: DvMF_0495 - DNA primase (RefSeq), at 581,834 to 583,633
_0495
DvMF_0496: DvMF_0496 - Smr protein/MutS2 (RefSeq), at 583,728 to 586,181
_0496
DvMF_0497: DvMF_0497 - GatB/YqeY family protein (RefSeq), at 586,190 to 586,636
_0497
DvMF_0498: rpsU - 30S ribosomal protein S21 (RefSeq), at 586,768 to 586,971
rpsU
DvMF_0499: DvMF_0499 - hypothetical protein (RefSeq), at 587,167 to 587,355
_0499
Position (kb) 583
584
585
586
587 Strain fitness (log2 ratio) -2
-1
0
1 at 583.952 kb on + strand at 583.960 kb on - strand at 584.039 kb on + strand, within DvMF_0496 at 584.170 kb on + strand, within DvMF_0496 at 584.332 kb on + strand, within DvMF_0496 at 584.340 kb on - strand, within DvMF_0496 at 584.403 kb on - strand, within DvMF_0496 at 584.649 kb on - strand, within DvMF_0496 at 584.774 kb on - strand, within DvMF_0496 at 584.779 kb on - strand, within DvMF_0496 at 585.016 kb on - strand, within DvMF_0496 at 585.337 kb on + strand, within DvMF_0496 at 585.423 kb on + strand, within DvMF_0496 at 585.426 kb on - strand, within DvMF_0496 at 585.898 kb on - strand, within DvMF_0496 at 585.911 kb on - strand, within DvMF_0496 at 586.027 kb on + strand at 586.035 kb on - strand at 586.090 kb on - strand at 586.160 kb on + strand at 586.278 kb on - strand, within DvMF_0497 at 586.364 kb on + strand, within DvMF_0497 at 587.057 kb on - strand at 587.178 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 583,952 + +0.4 583,960 - -0.7 584,039 + DvMF_0496 0.13 +0.5 584,170 + DvMF_0496 0.18 +0.5 584,332 + DvMF_0496 0.25 -0.6 584,340 - DvMF_0496 0.25 +0.1 584,403 - DvMF_0496 0.28 -0.8 584,649 - DvMF_0496 0.38 -0.6 584,774 - DvMF_0496 0.43 -0.6 584,779 - DvMF_0496 0.43 +1.3 585,016 - DvMF_0496 0.52 +1.0 585,337 + DvMF_0496 0.66 -2.2 585,423 + DvMF_0496 0.69 -0.4 585,426 - DvMF_0496 0.69 -2.1 585,898 - DvMF_0496 0.88 -0.0 585,911 - DvMF_0496 0.89 -1.9 586,027 + -0.6 586,035 - -0.7 586,090 - -0.6 586,160 + -0.3 586,278 - DvMF_0497 0.20 -0.6 586,364 + DvMF_0497 0.39 -0.7 587,057 - -0.9 587,178 - -0.4
Or see this region's nucleotide sequence