Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0492

Experiment: MoYLS4 with nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrho and DvMF_0492 are separated by 145 nucleotidesDvMF_0492 and DvMF_0493 are separated by 308 nucleotides DvMF_0491: rho - transcription termination factor Rho (RefSeq), at 575,162 to 576,412 rho DvMF_0492: DvMF_0492 - multicopper oxidase type 2 (RefSeq), at 576,558 to 578,495 _0492 DvMF_0493: DvMF_0493 - diguanylate cyclase (RefSeq), at 578,804 to 579,874 _0493 Position (kb) 576 577 578 579Strain fitness (log2 ratio) -2 -1 0 1at 576.777 kb on + strand, within DvMF_0492at 576.959 kb on + strand, within DvMF_0492at 576.966 kb on + strand, within DvMF_0492at 576.966 kb on + strand, within DvMF_0492at 577.008 kb on - strand, within DvMF_0492at 577.098 kb on - strand, within DvMF_0492at 577.151 kb on - strand, within DvMF_0492at 577.364 kb on - strand, within DvMF_0492at 577.458 kb on - strand, within DvMF_0492at 578.014 kb on - strand, within DvMF_0492at 578.188 kb on + strand, within DvMF_0492at 578.369 kb on + strandat 578.369 kb on + strandat 578.622 kb on + strandat 578.622 kb on + strandat 578.630 kb on - strandat 578.630 kb on - strandat 578.853 kb on + strandat 578.921 kb on + strand, within DvMF_0493at 578.983 kb on - strand, within DvMF_0493at 579.016 kb on - strand, within DvMF_0493

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM
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576,777 + DvMF_0492 0.11 +0.4
576,959 + DvMF_0492 0.21 -1.1
576,966 + DvMF_0492 0.21 -0.8
576,966 + DvMF_0492 0.21 -0.8
577,008 - DvMF_0492 0.23 -0.7
577,098 - DvMF_0492 0.28 -0.2
577,151 - DvMF_0492 0.31 +0.0
577,364 - DvMF_0492 0.42 -1.1
577,458 - DvMF_0492 0.46 -0.3
578,014 - DvMF_0492 0.75 +0.1
578,188 + DvMF_0492 0.84 -0.4
578,369 + -1.4
578,369 + -0.7
578,622 + -0.1
578,622 + -0.3
578,630 - -1.2
578,630 - -0.9
578,853 + -0.6
578,921 + DvMF_0493 0.11 -0.7
578,983 - DvMF_0493 0.17 -0.6
579,016 - DvMF_0493 0.20 -2.0

Or see this region's nucleotide sequence