Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0145 and DvMF_0146 overlap by 4 nucleotides DvMF_0146 and DvMF_0147 are separated by 6 nucleotides DvMF_0147 and DvMF_0148 are separated by 204 nucleotides
DvMF_0145: DvMF_0145 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 161,265 to 163,133
_0145
DvMF_0146: DvMF_0146 - hypothetical protein (RefSeq), at 163,130 to 163,639
_0146
DvMF_0147: DvMF_0147 - hypothetical protein (RefSeq), at 163,646 to 164,674
_0147
DvMF_0148: DvMF_0148 - HAD-superfamily hydrolase, subfamily IA, variant 1 (RefSeq), at 164,879 to 165,622
_0148
Position (kb) 163
164
165 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 162.886 kb on + strand, within DvMF_0145 at 162.886 kb on - strand, within DvMF_0145 at 163.103 kb on - strand at 163.127 kb on + strand at 163.375 kb on - strand, within DvMF_0146 at 163.466 kb on - strand, within DvMF_0146 at 163.624 kb on + strand at 163.624 kb on + strand at 163.632 kb on - strand at 163.632 kb on - strand at 163.632 kb on - strand at 163.682 kb on + strand at 163.690 kb on - strand at 163.874 kb on - strand, within DvMF_0147 at 163.900 kb on + strand, within DvMF_0147 at 163.942 kb on - strand, within DvMF_0147 at 164.022 kb on - strand, within DvMF_0147 at 164.037 kb on - strand, within DvMF_0147 at 164.048 kb on - strand, within DvMF_0147 at 164.187 kb on + strand, within DvMF_0147 at 164.483 kb on + strand, within DvMF_0147 at 164.550 kb on + strand, within DvMF_0147 at 164.558 kb on - strand, within DvMF_0147 at 164.604 kb on - strand at 164.891 kb on - strand at 165.184 kb on + strand, within DvMF_0148 at 165.333 kb on - strand, within DvMF_0148 at 165.333 kb on - strand, within DvMF_0148 at 165.374 kb on - strand, within DvMF_0148 at 165.386 kb on + strand, within DvMF_0148 at 165.499 kb on + strand, within DvMF_0148
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 162,886 + DvMF_0145 0.87 -0.3 162,886 - DvMF_0145 0.87 -0.9 163,103 - -1.0 163,127 + -0.2 163,375 - DvMF_0146 0.48 -1.5 163,466 - DvMF_0146 0.66 -0.6 163,624 + -0.9 163,624 + -0.9 163,632 - -0.2 163,632 - -1.0 163,632 - -0.7 163,682 + -0.3 163,690 - -2.9 163,874 - DvMF_0147 0.22 -2.7 163,900 + DvMF_0147 0.25 -0.3 163,942 - DvMF_0147 0.29 -1.5 164,022 - DvMF_0147 0.37 -0.3 164,037 - DvMF_0147 0.38 -0.8 164,048 - DvMF_0147 0.39 -0.8 164,187 + DvMF_0147 0.53 -0.6 164,483 + DvMF_0147 0.81 +0.2 164,550 + DvMF_0147 0.88 -0.1 164,558 - DvMF_0147 0.89 -0.8 164,604 - -0.9 164,891 - -0.6 165,184 + DvMF_0148 0.41 +0.4 165,333 - DvMF_0148 0.61 -1.1 165,333 - DvMF_0148 0.61 +0.6 165,374 - DvMF_0148 0.67 -0.3 165,386 + DvMF_0148 0.68 -0.6 165,499 + DvMF_0148 0.83 +0.1
Or see this region's nucleotide sequence