Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0122 and DvMF_0123 overlap by 1 nucleotides DvMF_0123 and DvMF_0124 are separated by 3 nucleotides DvMF_0124 and DvMF_0125 overlap by 17 nucleotides
DvMF_0122: DvMF_0122 - exodeoxyribonuclease VII, large subunit (RefSeq), at 133,898 to 135,433
_0122
DvMF_0123: DvMF_0123 - Peptidase M23 (RefSeq), at 135,433 to 136,443
_0123
DvMF_0124: DvMF_0124 - exodeoxyribonuclease VII small subunit (RefSeq), at 136,447 to 136,749
_0124
DvMF_0125: DvMF_0125 - Polyprenyl synthetase (RefSeq), at 136,733 to 137,674
_0125
Position (kb) 135
136
137 Strain fitness (log2 ratio) -2
-1
0
1 at 134.700 kb on - strand, within DvMF_0122 at 134.825 kb on - strand, within DvMF_0122 at 135.013 kb on - strand, within DvMF_0122 at 135.024 kb on + strand, within DvMF_0122 at 135.084 kb on + strand, within DvMF_0122 at 135.120 kb on + strand, within DvMF_0122 at 135.121 kb on + strand, within DvMF_0122 at 135.595 kb on - strand, within DvMF_0123 at 135.605 kb on - strand, within DvMF_0123 at 135.676 kb on + strand, within DvMF_0123 at 135.774 kb on - strand, within DvMF_0123 at 136.155 kb on - strand, within DvMF_0123 at 136.607 kb on + strand, within DvMF_0124 at 136.622 kb on + strand, within DvMF_0124 at 137.368 kb on + strand, within DvMF_0125 at 137.403 kb on - strand, within DvMF_0125
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 134,700 - DvMF_0122 0.52 -0.1 134,825 - DvMF_0122 0.60 -0.3 135,013 - DvMF_0122 0.73 -1.4 135,024 + DvMF_0122 0.73 -0.5 135,084 + DvMF_0122 0.77 -0.7 135,120 + DvMF_0122 0.80 -0.9 135,121 + DvMF_0122 0.80 -0.0 135,595 - DvMF_0123 0.16 -1.3 135,605 - DvMF_0123 0.17 -0.7 135,676 + DvMF_0123 0.24 -0.6 135,774 - DvMF_0123 0.34 -1.7 136,155 - DvMF_0123 0.71 -1.0 136,607 + DvMF_0124 0.53 -1.4 136,622 + DvMF_0124 0.58 -0.6 137,368 + DvMF_0125 0.67 -0.5 137,403 - DvMF_0125 0.71 -1.9
Or see this region's nucleotide sequence