Experiment: MoYLS4 with nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0010 and DvMF_0011 are separated by 2 nucleotides DvMF_0011 and DvMF_0012 are separated by 231 nucleotides
DvMF_0010: DvMF_0010 - diguanylate phosphodiesterase (RefSeq), at 13,084 to 14,547
_0010
DvMF_0011: DvMF_0011 - L-serine ammonia-lyase (EC 4.3.1.17) <small>(from data)</small>, at 14,550 to 15,929
_0011
DvMF_0012: DvMF_0012 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 16,161 to 17,159
_0012
Position (kb) 14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 13.581 kb on - strand, within DvMF_0010 at 13.585 kb on - strand, within DvMF_0010 at 13.762 kb on - strand, within DvMF_0010 at 13.771 kb on + strand, within DvMF_0010 at 13.819 kb on - strand, within DvMF_0010 at 13.819 kb on - strand, within DvMF_0010 at 13.970 kb on - strand, within DvMF_0010 at 14.039 kb on + strand, within DvMF_0010 at 14.201 kb on - strand, within DvMF_0010 at 14.213 kb on + strand, within DvMF_0010 at 14.218 kb on + strand, within DvMF_0010 at 14.233 kb on + strand, within DvMF_0010 at 14.238 kb on + strand, within DvMF_0010 at 14.366 kb on - strand, within DvMF_0010 at 14.468 kb on + strand at 14.691 kb on + strand, within DvMF_0011 at 14.798 kb on - strand, within DvMF_0011 at 14.846 kb on + strand, within DvMF_0011 at 14.854 kb on - strand, within DvMF_0011 at 14.924 kb on + strand, within DvMF_0011 at 14.990 kb on + strand, within DvMF_0011 at 15.002 kb on + strand, within DvMF_0011 at 15.032 kb on + strand, within DvMF_0011 at 15.093 kb on - strand, within DvMF_0011 at 15.323 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.460 kb on - strand, within DvMF_0011 at 15.572 kb on - strand, within DvMF_0011 at 15.701 kb on - strand, within DvMF_0011 at 15.769 kb on - strand, within DvMF_0011 at 15.801 kb on + strand at 15.921 kb on - strand at 16.019 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with nitrate 50 mM remove 13,581 - DvMF_0010 0.34 +0.4 13,585 - DvMF_0010 0.34 -0.7 13,762 - DvMF_0010 0.46 +0.0 13,771 + DvMF_0010 0.47 -0.5 13,819 - DvMF_0010 0.50 -1.5 13,819 - DvMF_0010 0.50 -1.0 13,970 - DvMF_0010 0.61 -0.1 14,039 + DvMF_0010 0.65 -0.8 14,201 - DvMF_0010 0.76 +0.0 14,213 + DvMF_0010 0.77 +0.3 14,218 + DvMF_0010 0.77 +1.2 14,233 + DvMF_0010 0.78 -0.6 14,238 + DvMF_0010 0.79 -1.7 14,366 - DvMF_0010 0.88 +0.4 14,468 + -1.4 14,691 + DvMF_0011 0.10 -1.0 14,798 - DvMF_0011 0.18 -0.3 14,846 + DvMF_0011 0.21 -2.8 14,854 - DvMF_0011 0.22 -0.7 14,924 + DvMF_0011 0.27 -1.5 14,990 + DvMF_0011 0.32 -1.3 15,002 + DvMF_0011 0.33 -0.4 15,032 + DvMF_0011 0.35 -1.0 15,093 - DvMF_0011 0.39 -2.1 15,323 + DvMF_0011 0.56 -1.3 15,452 + DvMF_0011 0.65 -0.3 15,452 + DvMF_0011 0.65 -1.3 15,452 + DvMF_0011 0.65 -0.8 15,452 + DvMF_0011 0.65 -0.2 15,452 + DvMF_0011 0.65 -1.2 15,460 - DvMF_0011 0.66 -1.3 15,572 - DvMF_0011 0.74 -3.1 15,701 - DvMF_0011 0.83 -2.4 15,769 - DvMF_0011 0.88 -1.3 15,801 + +0.4 15,921 - -1.6 16,019 - -0.6
Or see this region's nucleotide sequence